Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   V8690_RS13270 Genome accession   NZ_CP146350
Coordinates   2840059..2841987 (+) Length   642 a.a.
NCBI ID   WP_338778545.1    Uniprot ID   -
Organism   Streptomyces sp. DG1A-41     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2835059..2846987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8690_RS13255 (V8690_13255) - 2836319..2836624 (+) 306 WP_037671666.1 YtxH domain-containing protein -
  V8690_RS13260 (V8690_13260) - 2836778..2838223 (+) 1446 WP_338778541.1 FGGY family carbohydrate kinase -
  V8690_RS13265 (V8690_13265) rcrP 2838326..2840059 (+) 1734 WP_338778543.1 ABC transporter ATP-binding protein Regulator
  V8690_RS13270 (V8690_13270) rcrQ 2840059..2841987 (+) 1929 WP_338778545.1 ABC transporter ATP-binding protein Regulator
  V8690_RS13275 (V8690_13275) - 2842122..2843414 (-) 1293 WP_338778547.1 sigma-70 family RNA polymerase sigma factor -
  V8690_RS13280 (V8690_13280) dnaG 2843501..2845423 (-) 1923 WP_338778549.1 DNA primase -
  V8690_RS13285 (V8690_13285) - 2845462..2846726 (-) 1265 Protein_2636 FAD/NAD(P)-binding oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69570.02 Da        Isoelectric Point: 5.9108

>NTDB_id=855133 V8690_RS13270 WP_338778545.1 2840059..2841987(+) (rcrQ) [Streptomyces sp. DG1A-41]
MAGPMGRMMAGGGPDQRSLDFKGSGKRLVARFRPERVTICVLLLCVVLSVGLNVVGPKILGKATDLVFAGIVGRDMPDGA
SKEQVLDSMRQRGDGDVADMLRSTDFTPGQGIDFTAVGHVLLLALGVFTVAGLLMAVATRLVNRAVNRTMFQMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTIIGVLAMMFYVSWILALVALVTVPLSFVIATRVGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHALVKVFGRQEESAKQFAEQNDALYEAGFRAQFNSGVMQPLMFFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFVQYSRQFSMPLTQVASMANLVQSGVASAERVFEVLDAEEQSADPVPGVRPETLRGQVALE
HVSFRYDPDKPLIEDLSLKVEPGQTVAIVGPTGAGKTTLVNLLMRFYDVTAGRITLDGVDIARMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGAARDVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSEPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGAIVEQGTHEELLAAGGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=855133 V8690_RS13270 WP_338778545.1 2840059..2841987(+) (rcrQ) [Streptomyces sp. DG1A-41]
ATGGCCGGGCCCATGGGGCGGATGATGGCCGGGGGCGGCCCCGACCAGCGCTCGCTGGACTTCAAGGGATCGGGCAAACG
GCTCGTCGCGCGGTTCCGGCCGGAGCGGGTCACCATCTGCGTGCTGCTGCTGTGCGTGGTGCTCAGCGTCGGCCTCAACG
TCGTCGGGCCGAAGATCCTCGGCAAGGCGACCGACCTGGTCTTCGCGGGCATCGTCGGGCGGGACATGCCGGACGGGGCG
AGCAAGGAGCAGGTCCTCGACTCCATGCGGCAGCGCGGGGACGGTGACGTCGCCGACATGCTGCGCAGCACCGACTTCAC
GCCCGGCCAGGGCATCGACTTCACGGCCGTCGGGCATGTGCTGCTGCTCGCGCTGGGCGTGTTCACGGTGGCCGGGCTGC
TGATGGCGGTGGCGACGCGGCTGGTCAACCGGGCCGTCAACCGGACCATGTTCCAGATGCGCGAGGACGTGCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGCCAGCGCGGCGAGGTGCTGTCCCGCGCGACGAACGACATCGACAA
CATCGGGCAGACACTCCAGCAGTCGATGGGGCAGCTCATCAACTCGGTGCTGACCATCATCGGCGTGCTCGCGATGATGT
TCTACGTCTCCTGGATCCTGGCGCTGGTCGCGCTCGTGACCGTGCCGCTGTCGTTCGTCATCGCCACCCGCGTGGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACGACGGGCAAGCTGAACGCGCACATCGAGGAGATGTACACCGGGCA
CGCCCTGGTGAAGGTGTTCGGCCGGCAGGAGGAGTCGGCGAAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCG
GGTTCCGGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGTTCTTCGTGTCGAACCTCAACTACGTGCTGGTCGCG
GTCGTCGGCGGGCTGCGGGTCGCCTCGGGCTCGCTGTCCATCGGTGATGTGCAGGCCTTCGTCCAGTACTCGCGGCAGTT
CTCCATGCCGCTGACGCAGGTCGCCTCCATGGCGAACCTGGTGCAGTCGGGTGTCGCCTCGGCAGAGCGGGTCTTCGAAG
TGCTGGACGCGGAGGAGCAGAGTGCCGATCCCGTGCCGGGGGTGCGGCCGGAGACCCTGCGCGGACAGGTGGCGCTGGAG
CACGTGTCGTTCCGCTACGACCCCGACAAGCCGTTGATCGAGGACCTGTCGCTGAAGGTCGAGCCCGGGCAGACGGTCGC
CATCGTCGGCCCGACGGGCGCCGGCAAGACGACGCTGGTGAACCTGCTGATGCGGTTCTACGACGTCACCGCCGGGCGCA
TCACCCTCGACGGGGTCGACATCGCGCGGATGTCCCGGGACGAACTGCGCGCCGGGATCGGCATGGTGCTCCAGGACACG
TGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGGGCCGCCCGGGACGTCACGCGCGGGGAGATCGAGGAGGC
GGCCCGGGCCGCGCACGCGGACCGGTTCATCCGTACGCTGCCGGACGGGTACGACACGGTGATCGACGACGAGGGGTCGG
GGGTCAGCGCGGGTGAGAAGCAGCTGATCACCATCGCCCGGGCGTTTCTGTCCGAACCAGTGATCCTGGTGCTCGACGAG
GCGACGAGCTCGGTCGACACGCGTACGGAGGTGCTCATCCAGAAGGCGATGGCCAAACTGGCGCACGGACGTACCTCGTT
CGTCATCGCGCACCGGCTGTCGACGATCCGGGACGCGGACACGATTCTGGTGATGGAGAACGGGGCGATCGTGGAACAGG
GCACGCACGAGGAGCTGCTGGCGGCGGGCGGGGCCTATGCCCGGCTGTACAAGGCGCAGTTCGCGCAGGCGGTGGCCGAG
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(40-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.129

82.243

0.363