Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   V8690_RS13265 Genome accession   NZ_CP146350
Coordinates   2838326..2840059 (+) Length   577 a.a.
NCBI ID   WP_338778543.1    Uniprot ID   -
Organism   Streptomyces sp. DG1A-41     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2833326..2845059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8690_RS13230 (V8690_13230) - 2834720..2834983 (+) 264 WP_301980795.1 type II toxin-antitoxin system VapB family antitoxin -
  V8690_RS13235 (V8690_13235) - 2834980..2835393 (+) 414 WP_338778536.1 PIN domain nuclease -
  V8690_RS13255 (V8690_13255) - 2836319..2836624 (+) 306 WP_037671666.1 YtxH domain-containing protein -
  V8690_RS13260 (V8690_13260) - 2836778..2838223 (+) 1446 WP_338778541.1 FGGY family carbohydrate kinase -
  V8690_RS13265 (V8690_13265) rcrP 2838326..2840059 (+) 1734 WP_338778543.1 ABC transporter ATP-binding protein Regulator
  V8690_RS13270 (V8690_13270) rcrQ 2840059..2841987 (+) 1929 WP_338778545.1 ABC transporter ATP-binding protein Regulator
  V8690_RS13275 (V8690_13275) - 2842122..2843414 (-) 1293 WP_338778547.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62654.74 Da        Isoelectric Point: 5.3723

>NTDB_id=855132 V8690_RS13265 WP_338778543.1 2838326..2840059(+) (rcrP) [Streptomyces sp. DG1A-41]
MLIRLLRTFLRPYKRPIALLVLLQFLQTCATLYLPTLNADIIDQGVVNGDTGYILGYGALMIGISLVQVVCNIGAVYYGA
RTAAALGRDVRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVLALGLDVPLSGV
LVAVVPVLGVCVTLIVRRLRPLFRSMQVRLDTVNRVLREQITGNRVIRAFVRDEYEQQRFRKANTDLTDFALGTGNLLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVLDTSSSVVP
PSAPVRELRRHGHLELRGAGFCYPGAEEPVLRAVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGQVLVDGVEVA
EIDPELLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQARDFVERLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAQETAEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=855132 V8690_RS13265 WP_338778543.1 2838326..2840059(+) (rcrP) [Streptomyces sp. DG1A-41]
GTGCTCATACGACTCCTGCGGACCTTTCTCAGGCCCTACAAGAGACCCATCGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
AACCTGCGCCACGCTCTACCTGCCCACGCTGAACGCGGACATCATCGACCAGGGCGTCGTCAACGGCGACACCGGCTACA
TCCTGGGCTACGGCGCCCTGATGATCGGCATCTCGCTGGTCCAGGTCGTCTGCAACATCGGTGCCGTGTACTACGGCGCC
CGTACGGCTGCGGCGCTCGGCCGGGACGTGCGGGCGGCCGTGTTCGACCGGGTGCAGTCGTTCTCCGCGCGTGAGGTGGG
TCACTTCGGGGCGCCGTCGCTGATCACCCGGACGACGAACGACGTCCAGCAGGTGCAGATGCTGGCGCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTGCTGGCGCTCGGTCTGGACGTGCCGCTGTCCGGTGTG
CTGGTGGCGGTCGTGCCGGTGCTGGGCGTCTGCGTGACGCTGATCGTGCGGCGGCTGCGGCCGCTGTTCCGGTCGATGCA
GGTGCGGCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGGGCCTTCGTCCGGGACG
AGTACGAGCAGCAGCGCTTCCGGAAGGCCAACACCGATCTCACGGACTTCGCGCTGGGCACCGGCAACCTGCTCGCGCTG
ATGTTCCCGATCGTCATGACGGTGGTGAACCTGTCGTCGATCGCCGTGGTGTGGTTCGGGGCGCACCGGATCGACAGCGG
CGGGATGCAGATCGGTGATCTGACGGCCTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGTGCCGAACGCGTCCAGGAGGTGCTGGACACCTCGTCGAGTGTCGTGCCG
CCGTCGGCGCCCGTGCGGGAGCTGCGCCGGCACGGTCATCTGGAGCTCCGCGGGGCGGGCTTTTGCTATCCGGGTGCCGA
GGAGCCGGTGCTGCGGGCCGTGGACCTCGTCGCCCGGCCCGGCGAGACGACCGCCGTCATCGGTTCGACCGGCAGCGGCA
AGTCCACGCTGCTCGGACTGGTCCCCAGGCTGTTCGACGCGACCGACGGGCAGGTGCTCGTGGACGGGGTCGAGGTGGCG
GAGATCGACCCGGAGCTGCTCGCGAAGACCGTCGGGCTGGTGCCGCAGAAGCCGTATCTGTTCGCGGGCACGGTGGCGAC
CAACCTGCGCTACGGCAATCCGGACGCCACCGACGAGGAACTGTGGCACGCGCTGGAGGTGGCGCAGGCCAGGGACTTCG
TGGAGCGGCTGGAGGGCGGGCTGGACGCGCCGATCGCGCAGGGCGGGACGAACGTCTCCGGCGGTCAGCGGCAGCGGCTC
GCGATCGCACGGACCCTCGTGCAGCGCCCCGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACGGA
CGCCGCACTGCGGGCCGCGCTCGCGCAGGAGACCGCGGAGGCGACCGTGGTGATCGTGGCCCAGCGGGTGGCGACCATCC
GGGACGCCGACCGGATCGTCGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGCCGGCACCACGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTCACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.062

100

0.381