Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V6M96_RS15780 Genome accession   NZ_CP146250
Coordinates   3231366..3231995 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain L26     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3226366..3236995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6M96_RS15765 (V6M96_15765) helD 3226608..3228662 (-) 2055 WP_072686303.1 DNA helicase IV -
  V6M96_RS15770 (V6M96_15770) yccF 3228785..3229231 (+) 447 WP_001261235.1 YccF domain-containing protein -
  V6M96_RS15775 (V6M96_15775) yccS 3229241..3231403 (+) 2163 WP_000323868.1 YccS family putative transporter -
  V6M96_RS15780 (V6M96_15780) sxy/tfoX 3231366..3231995 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  V6M96_RS15785 (V6M96_15785) sulA 3232214..3232723 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  V6M96_RS15790 (V6M96_15790) ompA 3233080..3234132 (+) 1053 WP_021577220.1 porin OmpA -
  V6M96_RS15795 (V6M96_15795) matP 3234208..3234660 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  V6M96_RS15800 (V6M96_15800) ycbZ 3234846..3236606 (+) 1761 WP_072686301.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=855077 V6M96_RS15780 WP_000839153.1 3231366..3231995(-) (sxy/tfoX) [Escherichia coli strain L26]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=855077 V6M96_RS15780 WP_000839153.1 3231366..3231995(-) (sxy/tfoX) [Escherichia coli strain L26]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTATATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1