Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   VP398_RS16750 Genome accession   NZ_CP146231
Coordinates   3497400..3498035 (-) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain G20AB08     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3492400..3503035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP398_RS16725 (VP398_16725) - 3492456..3493436 (-) 981 WP_001075411.1 DNA polymerase III subunit delta' -
  VP398_RS16730 (VP398_16730) kdsB 3493448..3494209 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VP398_RS16735 (VP398_16735) lpxK 3494219..3495229 (-) 1011 WP_000050464.1 tetraacyldisaccharide 4'-kinase -
  VP398_RS16740 (VP398_16740) msbA 3495232..3496959 (-) 1728 WP_001070734.1 lipid A export permease/ATP-binding protein MsbA -
  VP398_RS16745 (VP398_16745) - 3496956..3497384 (-) 429 WP_000669684.1 biopolymer transporter ExbD -
  VP398_RS16750 (VP398_16750) exbB 3497400..3498035 (-) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VP398_RS16755 (VP398_16755) - 3498085..3498972 (-) 888 WP_000023433.1 ParB/RepB/Spo0J family partition protein -
  VP398_RS16760 (VP398_16760) - 3498969..3499751 (-) 783 WP_000057212.1 ParA family protein -
  VP398_RS16765 (VP398_16765) rsmG 3499773..3500405 (-) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  VP398_RS16770 (VP398_16770) murU 3500493..3501182 (-) 690 WP_000646452.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  VP398_RS16775 (VP398_16775) - 3501182..3502195 (-) 1014 WP_001096106.1 phosphotransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=855023 VP398_RS16750 WP_000264037.1 3497400..3498035(-) (exbB) [Acinetobacter baumannii strain G20AB08]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=855023 VP398_RS16750 WP_000264037.1 3497400..3498035(-) (exbB) [Acinetobacter baumannii strain G20AB08]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACTTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393