Detailed information NTG0854972

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QY075_RS26080
• Genome accession: NZ_CP129688
• Coordinates: 5550880..5551752 (-)
• Length: 290 a.a.
• NCBI ID: WP_019486071.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PA2818
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5545880..5556752

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QY075_RS26035	-	5546741..5546911 (-)	171	WP_003094672.1	DUF3094 family protein	-
QY075_RS26040	-	5546937..5547386 (-)	450	WP_003094670.1	MOSC domain-containing protein	-
QY075_RS26045	-	5547383..5548012 (-)	630	WP_003094668.1	DUF1780 domain-containing protein	-
QY075_RS26050	-	5548145..5548570 (+)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
QY075_RS26055	-	5548567..5549037 (+)	471	WP_019486073.1	hypothetical protein	-
QY075_RS26060	-	5549034..5549723 (+)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
QY075_RS26065	-	5549829..5550038 (+)	210	WP_003094660.1	hypothetical protein	-
QY075_RS26070	yacG	5550075..5550275 (-)	201	WP_019486072.1	DNA gyrase inhibitor YacG	-
QY075_RS26075	coaE	5550272..5550883 (-)	612	WP_003112838.1	dephospho-CoA kinase	-
QY075_RS26080	pilD	5550880..5551752 (-)	873	WP_019486071.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
QY075_RS26085	pilC	5551756..5552976 (-)	1221	WP_003112840.1	type 4a pilus biogenesis protein PilC	Machinery gene
QY075_RS26090	pilB	5552980..5554680 (-)	1701	WP_023094327.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QY075_RS26095	pilA	5554912..5555364 (+)	453	WP_031636800.1	pilin	Machinery gene
QY075_RS26105	nadC	5555563..5556411 (-)	849	WP_003161760.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31766.84 Da
• Isoelectric Point: 7.7068

>NTDB_id=854972 QY075_RS26080 WP_019486071.1 5550880..5551752(-) (pilD) [Pseudomonas aeruginosa strain PA2818]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVALHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=854972 QY075_RS26080 WP_019486071.1 5550880..5551752(-) (pilD) [Pseudomonas aeruginosa strain PA2818]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATACTCCTTGGCCTGCTGGTTGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGTC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTTGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469