Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   QY075_RS25390 Genome accession   NZ_CP129688
Coordinates   5428569..5429126 (-) Length   185 a.a.
NCBI ID   WP_019486632.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA2818     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5423569..5434126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY075_RS25375 pilY1 5423667..5427152 (-) 3486 WP_019486630.1 type 4a pilus biogenesis protein PilY1 -
  QY075_RS25380 pilX 5427164..5427751 (-) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  QY075_RS25385 pilW 5427748..5428572 (-) 825 WP_023094394.1 type 4a pilus minor pilin PilW -
  QY075_RS25390 pilV 5428569..5429126 (-) 558 WP_019486632.1 type 4a pilus minor pilin PilV Machinery gene
  QY075_RS25395 - 5429117..5429623 (-) 507 WP_019486633.1 Tfp pilus assembly protein FimT/FimU -
  QY075_RS25400 - 5429729..5430238 (-) 510 WP_019486634.1 Tfp pilus assembly protein FimT/FimU -
  QY075_RS25405 thiO 5430373..5431467 (+) 1095 WP_023094393.1 glycine oxidase ThiO -
  QY075_RS25410 pilR 5431513..5432850 (-) 1338 WP_301759098.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20086.26 Da        Isoelectric Point: 7.9204

>NTDB_id=854968 QY075_RS25390 WP_019486632.1 5428569..5429126(-) (pilV) [Pseudomonas aeruginosa strain PA2818]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPTSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLMSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=854968 QY075_RS25390 WP_019486632.1 5428569..5429126(-) (pilV) [Pseudomonas aeruginosa strain PA2818]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAGTCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGAATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGACCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGATGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978