Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QUF17_RS16185 Genome accession   NZ_AP027417
Coordinates   2598724..2599191 (+) Length   155 a.a.
NCBI ID   WP_000340171.1    Uniprot ID   -
Organism   Escherichia coli strain EC361 isolate EC361     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2593724..2604191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUF17_RS16140 (MUTS5_31200) rplP 2593834..2594244 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  QUF17_RS16145 (MUTS5_31210) rpsC 2594257..2594958 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  QUF17_RS16150 (MUTS5_31220) rplV 2594976..2595308 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  QUF17_RS16155 (MUTS5_31230) rpsS 2595323..2595601 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  QUF17_RS16160 (MUTS5_31240) rplB 2595618..2596439 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  QUF17_RS16165 (MUTS5_31250) rplW 2596457..2596759 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  QUF17_RS16170 (MUTS5_31260) rplD 2596756..2597361 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  QUF17_RS16175 (MUTS5_31270) rplC 2597372..2598001 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  QUF17_RS16180 (MUTS5_31280) rpsJ 2598034..2598345 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  QUF17_RS16185 (MUTS5_31290) pilD 2598724..2599191 (+) 468 WP_000340171.1 A24 family peptidase Machinery gene
  QUF17_RS16190 (MUTS5_31300) bfr 2599188..2599664 (-) 477 WP_000675515.1 bacterioferritin -
  QUF17_RS16195 (MUTS5_31310) bfd 2599737..2599931 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  QUF17_RS16200 (MUTS5_31320) tuf 2600114..2601298 (-) 1185 WP_000031783.1 elongation factor Tu -
  QUF17_RS16205 (MUTS5_31330) fusA 2601369..2603483 (-) 2115 WP_000124700.1 elongation factor G -
  QUF17_RS16210 (MUTS5_31340) rpsG 2603580..2604050 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16938.08 Da        Isoelectric Point: 8.1296

>NTDB_id=85495 QUF17_RS16185 WP_000340171.1 2598724..2599191(+) (pilD) [Escherichia coli strain EC361 isolate EC361]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=85495 QUF17_RS16185 WP_000340171.1 2598724..2599191(+) (pilD) [Escherichia coli strain EC361 isolate EC361]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361

Multiple sequence alignment