Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   QY069_RS07460 Genome accession   NZ_CP129687
Coordinates   1519170..1519727 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA2209     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1514170..1524727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY069_RS07440 pilR 1515446..1516783 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  QY069_RS07445 thiO 1516829..1517923 (-) 1095 WP_003119424.1 glycine oxidase ThiO -
  QY069_RS07450 - 1518058..1518567 (+) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  QY069_RS07455 - 1518673..1519179 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  QY069_RS07460 pilV 1519170..1519727 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  QY069_RS07465 pilW 1519724..1520548 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  QY069_RS07470 pilX 1520545..1521132 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  QY069_RS07475 pilY1 1521144..1524635 (+) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=854921 QY069_RS07460 WP_003119423.1 1519170..1519727(+) (pilV) [Pseudomonas aeruginosa strain PA2209]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=854921 QY069_RS07460 WP_003119423.1 1519170..1519727(+) (pilV) [Pseudomonas aeruginosa strain PA2209]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995