Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   QN216_RS01315 Genome accession   NZ_CP129682
Coordinates   338097..339947 (+) Length   616 a.a.
NCBI ID   WP_394854715.1    Uniprot ID   -
Organism   Bifidobacterium fermentum strain WK013_4_14     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 333097..344947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN216_RS01300 (QN216_01290) - 333609..335195 (-) 1587 WP_369341132.1 amino acid permease -
  QN216_RS01305 (QN216_01295) - 335588..336109 (+) 522 WP_369341133.1 MarR family winged helix-turn-helix transcriptional regulator -
  QN216_RS01310 (QN216_01300) rcrP 336277..338046 (+) 1770 WP_369341134.1 ABC transporter ATP-binding protein Regulator
  QN216_RS01315 (QN216_01305) rcrQ 338097..339947 (+) 1851 WP_394854715.1 ABC transporter ATP-binding protein Regulator
  QN216_RS01320 (QN216_01310) - 340188..341042 (-) 855 WP_369341135.1 SDR family oxidoreductase -
  QN216_RS01325 (QN216_01315) - 341380..341691 (-) 312 WP_369341136.1 HigA family addiction module antitoxin -
  QN216_RS01330 (QN216_01320) - 341666..341863 (-) 198 WP_369341137.1 type II toxin-antitoxin system RelE/ParE family toxin -
  QN216_RS01335 (QN216_01325) - 342272..343183 (-) 912 WP_369341138.1 MurR/RpiR family transcriptional regulator -
  QN216_RS01340 (QN216_01330) - 343232..344464 (-) 1233 WP_369341139.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 67618.08 Da        Isoelectric Point: 6.4397

>NTDB_id=854871 QN216_RS01315 WP_394854715.1 338097..339947(+) (rcrQ) [Bifidobacterium fermentum strain WK013_4_14]
MGGPGHGMGGPVEKPENFSVSMGKLVKFTRKYIPATLLALVLGAIGTVFQVVGPDKLKDITNYIAKGLPEIINGKPVLRS
IDMTSVEHVAYLLVGLYVGYALLSYVQSWIMATITQNTARELRDAISKKINKLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGALITSVTLFVGSLVMMFINNVIMTLAAIGSSILGLVLMLVIMKVSQKYFVQQQLALGQVNGHVEEKYSGHVIVK
AYNGEANSIKEFERYNQSLYESGWKSQFLSGLMMPVMNFIGNLGYVVVCVVGAVLVINNSITFGVIVAFMMYIRLFTQPL
SQFAQAFQNLQRTAAASERVFGFLEEPEMADESQKQALLGRDSAGNPIQVKGDVEFEHVRFGYELDKPVIHDFSASVKAG
EKVAIVGPTGAGKTTMVNLLMRFYDLTGGTIRIDGVATNEVPRWNVHSQFSMVLQDTWVFRGSIFENVAYSKEGVTHDDV
QRACAAVGLDRYIQTLPDGYDTKLDDKTSLSQGQRQLLTIARAMVQNAPILILDEATSSVDTRTEEVIQKAMDSLTVGRT
SFVIAHRLSTIKNADMILVMDHGDIIERGTHDELLAKGGFYADLYNSQFAQTELTA

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=854871 QN216_RS01315 WP_394854715.1 338097..339947(+) (rcrQ) [Bifidobacterium fermentum strain WK013_4_14]
ATGGGCGGCCCAGGGCATGGCATGGGCGGTCCTGTTGAAAAACCTGAGAATTTCAGCGTTTCGATGGGCAAGCTCGTCAA
GTTTACGCGCAAATACATTCCGGCCACCTTGCTTGCCCTGGTTCTGGGCGCAATCGGCACGGTCTTCCAAGTCGTCGGCC
CAGACAAGCTCAAGGACATCACGAACTACATCGCCAAGGGCCTGCCGGAAATCATCAATGGGAAGCCGGTGCTGCGTTCG
ATCGACATGACTTCCGTCGAGCATGTCGCCTATCTGCTTGTGGGCCTCTACGTTGGCTATGCCCTGCTCAGCTATGTTCA
AAGCTGGATCATGGCGACCATCACGCAGAATACCGCGCGCGAGCTTCGCGATGCGATTTCGAAGAAGATCAACAAGCTGC
CGTTGAAGTACTTCGACAAGGTCAGCTATGGCGATGTGCTCAGCCGCATCACGAATGACGTCGACGCCATCGGGCAGACG
CTCGGACAGAGCCTTGGCGCGCTGATTACTTCCGTGACACTGTTCGTCGGTTCGCTGGTCATGATGTTCATCAACAATGT
CATCATGACGCTTGCGGCCATCGGCTCAAGCATTCTCGGACTCGTTCTGATGCTGGTGATCATGAAGGTCTCCCAGAAGT
ACTTCGTGCAGCAGCAGCTCGCACTCGGCCAGGTGAACGGCCATGTCGAAGAGAAGTATTCCGGGCATGTCATCGTCAAG
GCATACAACGGCGAGGCGAATTCCATCAAGGAGTTCGAGCGTTACAACCAGAGTCTGTATGAATCAGGCTGGAAGTCGCA
GTTCCTGTCTGGTCTGATGATGCCCGTCATGAACTTCATCGGCAATCTCGGATATGTCGTCGTCTGCGTCGTGGGTGCCG
TGCTGGTCATCAACAATTCGATAACCTTCGGCGTGATCGTTGCCTTCATGATGTACATCCGCCTGTTCACCCAGCCGCTG
AGCCAGTTCGCCCAGGCCTTCCAGAACCTTCAGCGCACAGCTGCCGCGTCGGAACGTGTCTTCGGATTCCTCGAAGAGCC
GGAGATGGCCGACGAATCGCAGAAGCAGGCGCTGCTTGGCCGGGATTCCGCAGGCAACCCGATTCAGGTGAAGGGCGACG
TCGAATTCGAGCATGTTCGATTCGGATACGAACTCGATAAGCCAGTCATCCATGACTTCAGCGCCTCGGTCAAGGCTGGC
GAGAAGGTTGCCATCGTTGGTCCGACAGGTGCCGGAAAGACGACCATGGTCAATCTGCTGATGCGCTTCTACGATCTGAC
CGGCGGCACGATTCGCATCGATGGGGTCGCAACGAACGAAGTCCCTCGTTGGAACGTGCACAGCCAGTTCTCGATGGTGC
TGCAGGATACATGGGTGTTCCGCGGTTCGATCTTCGAGAATGTCGCATACTCGAAGGAAGGCGTGACGCATGACGACGTT
CAGCGTGCCTGCGCGGCGGTGGGTCTTGACCGTTATATCCAGACGCTTCCTGATGGATATGACACCAAGCTCGACGACAA
GACATCGCTCTCGCAGGGCCAGCGCCAGCTGCTCACCATCGCTCGCGCGATGGTTCAGAATGCTCCGATCCTGATTCTTG
ACGAGGCGACCAGCTCGGTCGACACCCGAACCGAGGAAGTCATTCAGAAGGCAATGGACTCGCTGACGGTTGGTCGAACC
AGCTTCGTGATCGCGCACCGTTTGTCAACGATCAAGAACGCCGACATGATCCTCGTCATGGACCACGGTGACATCATCGA
GCGTGGCACGCACGATGAGCTTCTTGCCAAGGGCGGTTTCTACGCCGATCTCTATAACAGCCAGTTCGCCCAGACGGAGC
TCACTGCCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(391-538)

ABC transporter transmembrane region (ABC_membrane)

(38-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.712

95.779

0.505