Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   QN215_RS01770 Genome accession   NZ_CP129674
Coordinates   414388..416217 (+) Length   609 a.a.
NCBI ID   WP_369345027.1    Uniprot ID   -
Organism   Bifidobacterium aquikefiricola strain WK041_4_12     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 409388..421217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN215_RS01755 (QN215_01735) - 409801..411312 (-) 1512 WP_369345025.1 amino acid permease -
  QN215_RS01760 (QN215_01740) - 411792..412349 (+) 558 WP_369344427.1 MarR family winged helix-turn-helix transcriptional regulator -
  QN215_RS01765 (QN215_01745) rcrP 412532..414301 (+) 1770 WP_369345026.1 ABC transporter ATP-binding protein Regulator
  QN215_RS01770 (QN215_01750) rcrQ 414388..416217 (+) 1830 WP_369345027.1 ABC transporter ATP-binding protein Regulator
  QN215_RS01775 (QN215_01755) - 416391..417245 (-) 855 WP_369344428.1 SDR family oxidoreductase -
  QN215_RS01780 (QN215_01760) - 417519..418589 (-) 1071 WP_369344429.1 FAD:protein FMN transferase -
  QN215_RS01785 (QN215_01765) - 418803..420497 (+) 1695 WP_369344430.1 FTR1 family protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 67090.49 Da        Isoelectric Point: 6.1019

>NTDB_id=854863 QN215_RS01770 WP_369345027.1 414388..416217(+) (rcrQ) [Bifidobacterium aquikefiricola strain WK041_4_12]
MGRAVEKPEDFNVSMLKLVKFMRTYIPATLVALVLGAVGTICQIIGPDKLKDITNYIANGLPEIINGRPVLRSIDMTSVE
HVAYLLVGLYVGYAVLSYLQSWIMATITQNTAKKLRDSISKKINRLPLKYFDKVSYGDVLSRITNDVDAIGETLGQSLGA
LITSITLFVGSLVMMFLNNVIMTIAAIASSILGIVLMLVIMKISQKYFVQQQVALGQVNGHVEEKYTGHVIVKAYNGEAD
SIKEFERYNQSLYESGWKSQFLSGLMMPLMNFISNFGYVVVCVVGAVLVINHSITFGVIVAFMMYIRLFTQPLSQFAQAF
QNLQRTAAASERVFGFLEEPEMADESKKQTLLGQDAAGNPVPVKGSVEFDHVRFGYDPDTPVIHDFSASVSAGEKVAIVG
PTGAGKTTMVNLLMRFYDLSGGEIRIDGVSTHDVPRWNVHSQFSMVLQDTWVFRGTIYENVAYAKKGVTHADVEQACAAV
GLDRFIQTLPEGYDTKLDDKTSLSQGQRQLLTIARAMVQNAPILILDEATSSVDTRTEEVIQKAMDSLTVGRTSFVIAHR
LSTIKNADLILVMDHGDIVERGTHDELLAKGGFYADLYNSQFVQTDLTA

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=854863 QN215_RS01770 WP_369345027.1 414388..416217(+) (rcrQ) [Bifidobacterium aquikefiricola strain WK041_4_12]
ATGGGCAGAGCGGTCGAAAAACCGGAGGACTTCAACGTCTCCATGCTCAAGCTCGTCAAGTTCATGCGCACCTACATTCC
CGCAACCCTGGTGGCGCTCGTTCTCGGTGCAGTGGGAACGATCTGCCAGATCATTGGGCCCGACAAGCTCAAGGACATCA
CGAATTACATCGCCAACGGCCTCCCAGAGATCATCAATGGAAGACCTGTCCTGCGTTCGATCGACATGACTTCGGTCGAG
CATGTGGCCTATCTGCTGGTCGGCCTCTACGTGGGATACGCCGTCCTCAGCTACCTGCAAAGCTGGATCATGGCAACGAT
CACGCAGAACACCGCAAAGAAACTGCGCGATTCGATTTCCAAGAAAATCAACAGGCTTCCACTGAAATACTTCGACAAGG
TAAGCTACGGCGATGTGCTCAGCCGCATCACGAACGACGTGGATGCCATCGGCGAGACGCTCGGCCAAAGCCTGGGAGCA
CTGATCACCTCGATCACGCTTTTCGTGGGCTCGCTGGTCATGATGTTCCTCAACAACGTGATCATGACCATCGCTGCAAT
CGCTTCAAGCATTCTGGGCATCGTGCTGATGCTCGTGATCATGAAGATATCGCAGAAATACTTTGTGCAGCAGCAGGTCG
CCCTCGGGCAGGTCAATGGCCACGTAGAAGAGAAGTACACCGGTCACGTCATCGTGAAGGCCTATAACGGCGAGGCGGAT
TCCATCAAGGAATTCGAGCGATACAACCAGAGCCTGTACGAATCCGGCTGGAAGTCGCAGTTCCTTTCCGGTCTGATGAT
GCCGCTCATGAATTTCATCAGCAATTTCGGATATGTGGTTGTCTGCGTTGTCGGTGCGGTGCTCGTCATCAATCATTCGA
TAACCTTCGGCGTTATCGTCGCATTCATGATGTACATCCGCCTGTTTACACAGCCGCTGAGCCAGTTTGCTCAGGCTTTC
CAGAATCTGCAGCGCACGGCGGCAGCTTCGGAACGCGTTTTCGGATTCCTCGAAGAGCCGGAAATGGCAGATGAGTCGAA
GAAGCAGACTCTGCTCGGTCAGGATGCCGCAGGTAATCCGGTACCAGTGAAAGGCAGCGTCGAATTCGACCACGTCCGAT
TCGGATATGACCCCGATACGCCTGTGATTCACGACTTCAGTGCAAGTGTCAGTGCCGGAGAGAAGGTTGCCATCGTTGGC
CCGACAGGTGCCGGCAAGACCACCATGGTCAATCTGCTCATGCGTTTCTACGATCTTTCAGGCGGAGAAATTCGCATCGA
TGGCGTTTCGACGCATGATGTTCCCCGTTGGAATGTGCACAGTCAGTTCTCGATGGTACTGCAGGACACCTGGGTGTTCC
GTGGCACCATTTACGAGAACGTCGCCTATGCGAAGAAGGGCGTAACCCACGCCGATGTCGAACAGGCATGTGCGGCCGTC
GGTCTGGATCGTTTCATCCAAACACTTCCGGAAGGCTATGACACCAAGCTCGATGACAAGACGTCGCTTTCGCAAGGTCA
GCGGCAGCTGCTCACGATTGCCCGTGCCATGGTTCAGAATGCGCCCATCCTGATCCTTGACGAAGCGACCAGCTCGGTCG
ATACTCGCACCGAAGAGGTCATTCAGAAGGCCATGGACTCTCTGACGGTCGGGCGTACGAGCTTCGTGATTGCCCACAGG
CTATCCACCATCAAGAATGCCGATCTGATTCTCGTCATGGATCATGGCGACATCGTCGAACGTGGCACCCACGACGAACT
TCTCGCCAAGGGTGGCTTCTACGCCGACCTGTACAACAGCCAGTTCGTTCAAACCGATCTCACGGCCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(384-531)

ABC transporter transmembrane region (ABC_membrane)

(34-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.891

96.552

0.511