Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   QN215_RS01765 Genome accession   NZ_CP129674
Coordinates   412532..414301 (+) Length   589 a.a.
NCBI ID   WP_369345026.1    Uniprot ID   -
Organism   Bifidobacterium aquikefiricola strain WK041_4_12     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 407532..419301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN215_RS01750 (QN215_01730) ilvC 408380..409438 (+) 1059 WP_369345024.1 ketol-acid reductoisomerase -
  QN215_RS01755 (QN215_01735) - 409801..411312 (-) 1512 WP_369345025.1 amino acid permease -
  QN215_RS01760 (QN215_01740) - 411792..412349 (+) 558 WP_369344427.1 MarR family winged helix-turn-helix transcriptional regulator -
  QN215_RS01765 (QN215_01745) rcrP 412532..414301 (+) 1770 WP_369345026.1 ABC transporter ATP-binding protein Regulator
  QN215_RS01770 (QN215_01750) rcrQ 414388..416217 (+) 1830 WP_369345027.1 ABC transporter ATP-binding protein Regulator
  QN215_RS01775 (QN215_01755) - 416391..417245 (-) 855 WP_369344428.1 SDR family oxidoreductase -
  QN215_RS01780 (QN215_01760) - 417519..418589 (-) 1071 WP_369344429.1 FAD:protein FMN transferase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 64697.92 Da        Isoelectric Point: 5.6600

>NTDB_id=854862 QN215_RS01765 WP_369345026.1 412532..414301(+) (rcrP) [Bifidobacterium aquikefiricola strain WK041_4_12]
MLRICKYLSKQEIAELVLGVVLVVTQVWFDLKLPDYMSDVTRIVETPNSKVSDVWTAGGKMLLISLGSIACAVATGFIAA
RVSATFTQRLRSLEFKQVESFSTEELGKFSTASLITRSTNDITQIQMFITMGLTLIVRAPVMAVWAVLKIAGKGFEWTVA
TGIAVAFLVVAIAILMAMVGPKFRSMQRLTDNINLVARENLTGLRVVRAYNAEDYQEEKFDEANTDLTSTQLFTNRAIAF
LMPLMNTVLNGLMLAVYWIGAYLIEQATIANKLTLFSNMVVFSSYSVQVIMGFLLMSMVFVLLPRANVSAQRVLEVLDTP
ISITDGSVEQGEADQQGSVELRNMGFKYPDAKHNVLDNISFKVSKGQTIAFIGATGSGKSTLINLIPRFYDATEGQVLVD
GVNVKDYKLSALRDKIGYVPQESFLFRGTVESNIAYGAKANNVSEERKKAGIETAASIAHATEFVEKMPEGFDSPIAQSG
SNVSGGQKQRLSIARAVWSKPEILIFDDSFSALDFKTDREVRDALARETKGSTVMIVAQRIGTIMNADMIVVLDQGRIVG
MGTHKELLDSCEIYRQIAESQLSAKELVD

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=854862 QN215_RS01765 WP_369345026.1 412532..414301(+) (rcrP) [Bifidobacterium aquikefiricola strain WK041_4_12]
GTGCTTCGTATATGTAAATATCTATCAAAACAAGAGATCGCAGAACTCGTTCTTGGGGTTGTTCTCGTGGTCACTCAGGT
CTGGTTCGACCTGAAACTGCCTGACTACATGTCGGACGTCACGCGAATCGTGGAGACGCCGAACTCGAAGGTTTCGGATG
TCTGGACTGCGGGCGGCAAGATGCTGCTCATCTCGCTCGGCTCCATCGCATGCGCGGTCGCCACCGGATTCATTGCAGCC
CGCGTATCTGCCACCTTCACACAGCGTCTACGCTCGCTTGAATTCAAGCAGGTTGAATCGTTCTCGACCGAAGAGCTCGG
CAAGTTCTCAACCGCAAGCCTGATCACACGTTCCACCAACGACATCACACAGATCCAGATGTTCATCACCATGGGGCTGA
CACTGATCGTCCGCGCTCCAGTCATGGCGGTATGGGCAGTGCTCAAGATCGCAGGCAAGGGCTTTGAATGGACTGTCGCC
ACAGGCATCGCAGTGGCCTTCCTGGTCGTTGCCATCGCCATCTTGATGGCTATGGTCGGCCCGAAATTCCGCAGCATGCA
GCGCCTCACCGACAACATCAATCTTGTCGCACGCGAGAATCTGACCGGTCTGAGAGTCGTACGTGCATATAATGCCGAGG
ACTATCAGGAAGAGAAATTCGACGAAGCCAACACGGATCTGACTTCAACGCAGCTGTTCACCAACCGTGCGATTGCCTTC
CTGATGCCGCTGATGAACACGGTCTTGAATGGACTGATGCTCGCTGTCTATTGGATTGGTGCGTATCTGATCGAGCAGGC
AACGATTGCGAACAAGCTCACGCTCTTCTCGAACATGGTCGTCTTCTCAAGCTATTCCGTGCAGGTCATCATGGGCTTCC
TGCTCATGAGTATGGTCTTCGTGTTGCTTCCCCGTGCCAACGTTTCGGCACAGCGTGTGCTCGAAGTGCTCGATACGCCG
ATTTCCATAACCGATGGCAGCGTGGAACAGGGTGAAGCGGATCAGCAGGGTAGCGTCGAATTGCGCAATATGGGATTCAA
GTACCCTGACGCCAAACATAATGTGCTTGACAACATCAGCTTCAAGGTCAGCAAAGGCCAGACGATTGCCTTCATCGGCG
CAACCGGTTCAGGTAAATCAACGCTTATCAACCTGATTCCACGCTTCTATGACGCCACGGAAGGGCAAGTGCTGGTTGAC
GGAGTCAATGTGAAGGACTACAAGCTCAGCGCACTCCGCGACAAAATCGGATACGTGCCGCAGGAATCCTTCCTCTTCCG
AGGAACCGTCGAATCCAACATCGCGTATGGAGCGAAGGCCAACAATGTTTCTGAGGAGCGCAAGAAGGCGGGAATCGAGA
CTGCGGCATCCATCGCGCATGCAACCGAGTTCGTGGAAAAGATGCCAGAGGGCTTTGATTCTCCCATCGCTCAGTCCGGA
TCGAACGTCTCCGGCGGTCAGAAGCAGCGACTCTCGATTGCCAGGGCAGTATGGAGCAAGCCGGAGATTCTGATCTTCGA
TGACTCATTCTCCGCTCTCGACTTCAAAACCGACCGTGAGGTGCGTGACGCGCTCGCCCGTGAAACCAAGGGCAGCACGG
TCATGATTGTCGCCCAGCGCATTGGAACGATCATGAATGCGGACATGATAGTGGTGCTCGATCAGGGAAGAATCGTCGGC
ATGGGCACGCATAAGGAGCTGCTGGACTCCTGTGAAATCTACAGGCAGATAGCTGAAAGCCAGCTTAGCGCAAAGGAATT
GGTGGACTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-509)

ABC transporter transmembrane region (ABC_membrane)

(17-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

49.082

100

0.499