Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   QYQ99_RS16480 Genome accession   NZ_CP129672
Coordinates   3584949..3585356 (+) Length   135 a.a.
NCBI ID   WP_302089158.1    Uniprot ID   -
Organism   Comamonas testosteroni strain MWF001     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3579949..3590356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ99_RS16455 (QYQ99_16455) - 3580017..3581501 (+) 1485 WP_302089154.1 amino acid permease -
  QYQ99_RS16460 (QYQ99_16460) - 3581640..3582275 (+) 636 WP_302089155.1 DNA-3-methyladenine glycosylase I -
  QYQ99_RS16465 (QYQ99_16465) hemL 3582374..3583678 (-) 1305 WP_302089156.1 glutamate-1-semialdehyde 2,1-aminomutase -
  QYQ99_RS16470 (QYQ99_16470) - 3583662..3584630 (-) 969 WP_302089157.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QYQ99_RS16475 (QYQ99_16475) - 3584746..3584898 (+) 153 WP_034399566.1 rubredoxin -
  QYQ99_RS16480 (QYQ99_16480) pilG 3584949..3585356 (+) 408 WP_302089158.1 PleD family two-component system response regulator Regulator
  QYQ99_RS16485 (QYQ99_16485) - 3585353..3585715 (+) 363 WP_302089159.1 PleD family two-component system response regulator -
  QYQ99_RS16490 (QYQ99_16490) - 3585731..3586258 (+) 528 WP_302089160.1 chemotaxis protein CheW -
  QYQ99_RS16495 (QYQ99_16495) - 3586278..3588521 (+) 2244 WP_302089161.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14741.98 Da        Isoelectric Point: 6.9230

>NTDB_id=854858 QYQ99_RS16480 WP_302089158.1 3584949..3585356(+) (pilG) [Comamonas testosteroni strain MWF001]
MTASAAPLRVLVVDDSNTIRRSAEIFLKQGGHEVLLADDGFDALSKVNDYQPQLIFCDILMPKLDGYQTCAIIKRNARFA
STPVVMLSSKDGVFDKARGRMVGCQDYLTKPFTKDQLLQAVQQFALQAADVGAAS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=854858 QYQ99_RS16480 WP_302089158.1 3584949..3585356(+) (pilG) [Comamonas testosteroni strain MWF001]
GTGACAGCATCTGCTGCGCCTTTGCGCGTTCTGGTTGTGGATGACAGCAACACCATCCGCCGCAGCGCTGAAATTTTCCT
CAAGCAAGGTGGTCACGAAGTTCTTCTTGCCGATGATGGCTTCGATGCATTGTCCAAGGTCAACGACTACCAGCCCCAGC
TCATCTTCTGCGACATTCTGATGCCCAAGCTCGATGGCTATCAGACCTGCGCCATCATCAAGCGCAATGCTCGCTTTGCC
AGTACGCCCGTCGTGATGCTGTCATCCAAGGACGGTGTATTCGACAAGGCTCGCGGTCGCATGGTGGGCTGTCAAGACTA
TCTGACCAAACCATTTACCAAAGATCAATTGCTGCAAGCCGTACAACAATTCGCGCTGCAAGCTGCAGATGTGGGAGCTG
CATCATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

57.759

85.926

0.496