Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   PproGo58_RS02210 Genome accession   NZ_AP024503
Coordinates   481837..484056 (-) Length   739 a.a.
NCBI ID   WP_102862796.1    Uniprot ID   -
Organism   Pseudomonas protegens strain Go58     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 476837..489056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PproGo58_RS02190 (PproGo58_04320) hslU 477056..478393 (-) 1338 WP_102862794.1 ATP-dependent protease ATPase subunit HslU -
  PproGo58_RS02195 (PproGo58_04330) hslV 478451..478981 (-) 531 WP_003186641.1 ATP-dependent protease subunit HslV -
  PproGo58_RS02200 (PproGo58_04340) - 479180..479887 (-) 708 WP_016962745.1 SPOR domain-containing protein -
  PproGo58_RS02205 (PproGo58_04350) argS 479889..481625 (-) 1737 WP_102862795.1 arginine--tRNA ligase -
  PproGo58_RS02210 (PproGo58_04360) priA 481837..484056 (-) 2220 WP_102862796.1 primosomal protein N' Machinery gene
  PproGo58_RS02215 (PproGo58_04370) rpmE 484356..484577 (+) 222 WP_011058815.1 50S ribosomal protein L31 -
  PproGo58_RS02220 (PproGo58_04380) - 484619..485398 (+) 780 WP_207166954.1 thermonuclease family protein -
  PproGo58_RS02225 (PproGo58_04390) - 485586..486854 (+) 1269 WP_102862798.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 82025.54 Da        Isoelectric Point: 8.5521

>NTDB_id=85470 PproGo58_RS02210 WP_102862796.1 481837..484056(-) (priA) [Pseudomonas protegens strain Go58]
MPDAILRLALPSPLRRLFDYRAPAGVLRAQLHPGMRLRVPFGRREMIGILVEVADHSEVPAEKLKPALALLDPTPPLPPA
LFKLCLWTAQYYQHSLGDTLSWALPVLLRQGELAEARQERFWSVAPGARLDDPRIARAPRQREALATLAQHPHGVPHALL
SKLMLSKDSLDLLLAKDLVQVEVRKHAPGVRHEHWLAQPELPLNSEQRAAYEAIRAGFDSYHAFLLAGVTGSGKTEVYLQ
LIRETLEAGKQALVLIPEINLGPQTLARFEQRFNARIALLHSAVNDRERLDAWLAARDGEADIIIGTRSALFTPMKNPGL
IIIDEEHDGSYKQQEGLRYHARDLALVRARQENIPIVLGSATPSLESLHNAYTGRYGLLRLNERAGGAKQPRFLRLDVKS
RPLDSGISGPMQQAIGQTLAAGQQVLVFLNRRGFAPTLLCHDCGWMSECQRCDARMTVHQRSGELRCHHCGHVERVPRHC
PQCGKVDLRPVGAGTERAEERLGILFPDYPVLRVDRDSTSRKDAMNQLFATIQKGHPCILVGTQMLAKGHHFPRVTLVSI
LDADGGLFSGDFRASERMAQLIVQVAGRAGRAEEPGKVIIQTHLADHPLLVQLTEQGYFAFAEQALSERRAAGLPPFAHL
ALLRAEAHKPGQAEGFLDEACGEAERLLTEQNLGGIELLGPVPAPMERRAGRYRAQLLLQANARAPLHRLLSSWLLVLEQ
MPSGRQVRWSLDVDPVDLY

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=85470 PproGo58_RS02210 WP_102862796.1 481837..484056(-) (priA) [Pseudomonas protegens strain Go58]
GTGCCCGACGCCATCCTGCGCCTCGCCCTGCCTTCGCCCCTGCGCCGCTTGTTCGACTACCGTGCACCCGCCGGCGTGCT
GCGCGCCCAGCTGCATCCGGGCATGCGCCTGCGGGTGCCGTTCGGCCGTCGGGAAATGATCGGCATTCTGGTGGAAGTGG
CGGATCACAGCGAAGTCCCGGCCGAGAAACTCAAGCCGGCGCTGGCCTTACTGGACCCCACCCCGCCACTGCCACCCGCC
CTGTTCAAGCTGTGCCTGTGGACCGCCCAGTATTATCAGCACAGCCTGGGCGACACCCTGAGCTGGGCGCTGCCGGTGCT
ACTGCGCCAGGGAGAGCTGGCCGAGGCCCGCCAGGAGCGTTTCTGGTCGGTTGCCCCTGGCGCCCGCCTTGATGACCCAC
GCATCGCCCGTGCCCCGCGCCAGCGTGAAGCCCTGGCAACCCTGGCCCAGCATCCCCATGGCGTGCCCCATGCATTGCTG
AGCAAGCTGATGCTGAGCAAGGACAGCCTGGATCTGCTTCTGGCCAAGGACCTGGTGCAGGTGGAAGTACGCAAGCACGC
TCCGGGCGTGCGCCACGAACACTGGCTGGCCCAGCCCGAGTTGCCGCTCAACAGCGAGCAGCGCGCCGCCTACGAGGCCA
TCCGCGCCGGGTTCGACAGTTATCACGCCTTTCTCCTGGCTGGCGTCACCGGCAGCGGCAAGACCGAGGTCTACCTGCAA
CTGATCCGCGAGACCCTGGAAGCCGGCAAGCAGGCGCTGGTGCTGATCCCGGAGATCAACCTGGGGCCGCAAACCCTGGC
GCGCTTCGAGCAACGTTTCAACGCACGCATCGCCCTGCTGCACTCGGCGGTCAATGATCGGGAACGCCTGGACGCCTGGC
TCGCGGCCCGCGATGGCGAAGCCGATATCATCATCGGCACCCGCTCGGCCCTGTTCACCCCGATGAAAAATCCCGGGCTG
ATCATCATCGACGAGGAGCACGATGGCTCCTATAAACAGCAGGAAGGCCTGCGCTACCACGCCCGGGACCTGGCACTGGT
GCGGGCACGCCAGGAAAACATCCCGATTGTCCTGGGCTCGGCCACCCCATCCCTGGAAAGCCTGCACAACGCCTACACCG
GTCGCTATGGCCTGCTGCGCCTGAACGAGCGGGCCGGTGGCGCCAAACAGCCACGCTTCCTGCGCCTGGATGTGAAGAGT
CGCCCCTTGGACAGCGGTATTTCAGGCCCCATGCAACAAGCCATCGGTCAGACCCTGGCCGCCGGGCAGCAAGTGCTGGT
GTTTCTCAACCGCCGGGGCTTCGCTCCGACCCTGCTCTGCCATGACTGCGGCTGGATGTCTGAATGTCAGCGCTGCGATG
CCCGGATGACCGTGCACCAGCGCTCCGGCGAGTTGCGCTGCCACCATTGTGGCCACGTCGAGCGCGTGCCCCGGCACTGC
CCGCAATGCGGCAAGGTCGACCTGCGCCCCGTGGGCGCCGGAACCGAGCGGGCGGAAGAACGCCTGGGAATACTCTTCCC
CGACTACCCGGTACTACGGGTGGACCGCGACAGCACCTCACGTAAGGACGCGATGAACCAACTGTTCGCCACCATCCAGA
AAGGTCATCCGTGCATCCTGGTGGGCACCCAGATGCTGGCCAAGGGGCACCACTTCCCCCGGGTCACCCTGGTATCGATC
CTCGATGCCGACGGCGGCCTGTTCTCCGGCGACTTCCGTGCCAGCGAGCGCATGGCGCAACTGATCGTCCAGGTGGCCGG
GCGCGCGGGACGCGCCGAAGAACCGGGCAAGGTGATCATCCAGACTCACCTCGCCGACCACCCGCTACTGGTGCAACTGA
CCGAACAGGGCTACTTCGCCTTTGCCGAGCAGGCCCTGAGCGAGCGCCGCGCCGCCGGCCTGCCACCCTTCGCCCATCTG
GCGCTGCTGCGGGCCGAAGCCCACAAGCCAGGCCAGGCCGAAGGTTTTCTGGACGAAGCCTGCGGCGAAGCCGAGCGCTT
GCTGACGGAACAGAACCTGGGCGGCATCGAACTGTTGGGCCCGGTGCCAGCGCCGATGGAGCGGCGCGCCGGACGTTACC
GTGCGCAATTGCTGCTGCAGGCCAACGCCCGGGCACCGCTGCACCGGCTACTCAGCAGCTGGCTGCTGGTGCTGGAGCAG
ATGCCCAGCGGGCGCCAGGTGCGCTGGTCGCTGGATGTGGACCCGGTGGATTTGTATTGA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(9-105)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(449-475)

DEAD/DEAH box helicase (DEAD)

(207-367)

Primosomal protein N C-terminal domain (PriA_C)

(636-735)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

48.118

100

0.484

Multiple sequence alignment