Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QYS54_RS11475 Genome accession   NZ_CP129633
Coordinates   2142885..2143307 (-) Length   140 a.a.
NCBI ID   WP_028414496.1    Uniprot ID   -
Organism   Priestia aryabhattai strain S2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2137885..2148307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYS54_RS11445 (QYS54_11445) fsa 2138069..2138737 (+) 669 WP_099000382.1 fructose-6-phosphate aldolase -
  QYS54_RS11450 (QYS54_11450) - 2138816..2139301 (+) 486 WP_108674790.1 hypothetical protein -
  QYS54_RS11455 (QYS54_11455) - 2139631..2140911 (+) 1281 WP_234943114.1 glycosyltransferase -
  QYS54_RS11460 (QYS54_11460) - 2140934..2141590 (+) 657 WP_028414499.1 TetR/AcrR family transcriptional regulator -
  QYS54_RS11465 (QYS54_11465) - 2141743..2142336 (+) 594 WP_028414498.1 hypothetical protein -
  QYS54_RS11470 (QYS54_11470) - 2142377..2142721 (-) 345 WP_028414497.1 DUF1516 family protein -
  QYS54_RS11475 (QYS54_11475) nucA/comI 2142885..2143307 (-) 423 WP_028414496.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QYS54_RS11480 (QYS54_11480) - 2143448..2143912 (-) 465 WP_028414495.1 FixH family protein -
  QYS54_RS11485 (QYS54_11485) - 2143942..2145321 (-) 1380 WP_301862496.1 PepSY domain-containing protein -
  QYS54_RS11490 (QYS54_11490) - 2145456..2146097 (-) 642 WP_033580507.1 response regulator transcription factor -
  QYS54_RS11495 (QYS54_11495) - 2146098..2146919 (-) 822 WP_028414492.1 histidine kinase -
  QYS54_RS11500 (QYS54_11500) - 2147122..2147955 (+) 834 WP_099000376.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15315.15 Da        Isoelectric Point: 4.4990

>NTDB_id=854675 QYS54_RS11475 WP_028414496.1 2142885..2143307(-) (nucA/comI) [Priestia aryabhattai strain S2]
MKKIVSGILILVIAVIVMIEGNPLEQNSSTNTSYDEVISFPADRYPETAAHIQHAIDKGKSAVCTIDRDGAEENRRESLK
GIPTKSGYDRDEFPMAFCEEGGSGADIEYVKPSDNRGAGSWISHQVDEFPDGTKVLIEVK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=854675 QYS54_RS11475 WP_028414496.1 2142885..2143307(-) (nucA/comI) [Priestia aryabhattai strain S2]
TTGAAAAAAATTGTTTCTGGTATTTTAATTTTAGTAATAGCCGTTATTGTTATGATTGAAGGAAATCCGTTAGAGCAGAA
CTCTTCAACGAATACCTCCTACGATGAAGTCATTTCCTTCCCTGCTGATCGTTACCCTGAAACTGCAGCGCACATTCAAC
ATGCAATCGATAAAGGAAAATCGGCTGTTTGTACAATCGATCGAGACGGTGCTGAAGAAAACCGCCGTGAGTCTTTAAAA
GGCATTCCGACTAAAAGCGGCTATGACCGAGATGAGTTTCCGATGGCCTTTTGTGAAGAAGGCGGAAGCGGTGCAGATAT
TGAATATGTAAAGCCTTCAGACAACCGAGGCGCCGGGTCTTGGATTTCACATCAAGTAGATGAGTTTCCAGACGGTACGA
AGGTTTTAATTGAAGTGAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(44-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.207

82.857

0.507