Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QYS54_RS08595 Genome accession   NZ_CP129633
Coordinates   1649188..1649604 (-) Length   138 a.a.
NCBI ID   WP_272816230.1    Uniprot ID   -
Organism   Priestia aryabhattai strain S2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1644188..1654604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYS54_RS08570 (QYS54_08570) - 1644321..1644836 (+) 516 WP_028414992.1 enoyl-CoA hydratase/isomerase family protein -
  QYS54_RS08575 (QYS54_08575) - 1644977..1645102 (+) 126 WP_014458690.1 hypothetical protein -
  QYS54_RS08580 (QYS54_08580) helD 1645346..1647664 (+) 2319 WP_154973213.1 RNA polymerase recycling motor HelD -
  QYS54_RS08585 (QYS54_08585) - 1648053..1648643 (+) 591 WP_028414990.1 CPBP family intramembrane glutamic endopeptidase -
  QYS54_RS08590 (QYS54_08590) comJ 1648745..1649152 (-) 408 WP_098113593.1 competence protein ComJ -
  QYS54_RS08595 (QYS54_08595) nucA/comI 1649188..1649604 (-) 417 WP_272816230.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QYS54_RS08600 (QYS54_08600) - 1650007..1650267 (+) 261 WP_013058561.1 metal-sensitive transcriptional regulator -
  QYS54_RS08605 (QYS54_08605) - 1650424..1652373 (+) 1950 WP_028414987.1 FUSC family protein -
  QYS54_RS08610 (QYS54_08610) - 1652409..1653227 (-) 819 WP_028414986.1 squalene/phytoene synthase family protein -
  QYS54_RS08615 (QYS54_08615) - 1653553..1654224 (+) 672 WP_028414985.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15125.74 Da        Isoelectric Point: 4.2601

>NTDB_id=854670 QYS54_RS08595 WP_272816230.1 1649188..1649604(-) (nucA/comI) [Priestia aryabhattai strain S2]
MASLFIIIACVLGFIGHAAFLAPEKTEAEANYDATLYFPLDRYPETGDHIRDAITAGHSSVCTIDRDGAEANREESLKGY
PTKTGYDRDEWPMAMCEEGGAGADIRYISPSDNRGAGSWVGNQLEQYPDGTRVQFIVQ

Nucleotide


Download         Length: 417 bp        

>NTDB_id=854670 QYS54_RS08595 WP_272816230.1 1649188..1649604(-) (nucA/comI) [Priestia aryabhattai strain S2]
ATGGCAAGTCTATTCATTATCATTGCATGCGTTTTAGGGTTTATAGGACATGCGGCGTTTTTAGCTCCTGAAAAAACGGA
AGCCGAAGCAAACTATGATGCAACGCTTTATTTTCCACTGGACCGATATCCTGAAACCGGCGATCATATTCGCGACGCAA
TTACTGCTGGTCACTCTTCCGTTTGCACAATTGATCGCGATGGTGCTGAAGCAAACCGAGAAGAATCGCTGAAAGGATAC
CCAACAAAAACAGGATATGACCGTGATGAATGGCCAATGGCTATGTGCGAAGAAGGCGGAGCAGGAGCTGATATTCGCTA
TATTTCACCTTCTGATAACCGCGGAGCCGGCTCATGGGTTGGAAATCAGTTAGAACAGTACCCAGATGGTACACGCGTAC
AATTTATCGTGCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(44-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

65.079

91.304

0.594