Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   V1460_RS28925 Genome accession   NZ_CP146101
Coordinates   6421778..6423703 (+) Length   641 a.a.
NCBI ID   WP_338676544.1    Uniprot ID   -
Organism   Streptomyces sp. SCSIO 30461     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6416778..6428703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1460_RS28890 (V1460_28890) - 6416963..6417283 (-) 321 WP_338676540.1 MafI family immunity protein -
  V1460_RS28910 (V1460_28910) - 6418088..6418390 (+) 303 WP_338676541.1 YtxH domain-containing protein -
  V1460_RS28915 (V1460_28915) - 6418458..6419903 (+) 1446 WP_338676542.1 FGGY family carbohydrate kinase -
  V1460_RS28920 (V1460_28920) rcrP 6420045..6421778 (+) 1734 WP_338676543.1 ABC transporter ATP-binding protein Regulator
  V1460_RS28925 (V1460_28925) rcrQ 6421778..6423703 (+) 1926 WP_338676544.1 ABC transporter ATP-binding protein Regulator
  V1460_RS28930 (V1460_28930) - 6423783..6424019 (+) 237 WP_338676545.1 hypothetical protein -
  V1460_RS28935 (V1460_28935) - 6424007..6425260 (-) 1254 WP_407077547.1 RNA polymerase sigma factor -
  V1460_RS28940 (V1460_28940) dnaG 6425382..6427319 (-) 1938 WP_338676546.1 DNA primase -
  V1460_RS28945 (V1460_28945) - 6427329..6428597 (-) 1269 WP_338676547.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 68970.23 Da        Isoelectric Point: 5.1117

>NTDB_id=854664 V1460_RS28925 WP_338676544.1 6421778..6423703(+) (rcrQ) [Streptomyces sp. SCSIO 30461]
MAGPGGRMMMPNAGERSMDFKGSGKRLLAQLAPERGTLWTMLGAAVLSVAAAVVGPKILGQATDLVFAGVVGREIAGGTS
KEQALDALRARGDSGLADMLSGVDFTPGRGIDFTSVGHVLLIALAVYVGAGLLMLVSTRLSIRVINRTVYRMREDVQAKL
SRLPLSYFDKAKRGEVLSRATNDLDNISQTMQQSMGQLINSLLTIVGVLAMMLWISPLLALVALLTVPLSVFVAAKVGKR
SQPQFVQQWKSTGSLNAHIEEMYSGHTLVKVFGRQQESAEDFAEQNEALYEAGFRAQFNSGVMQPLMYFISNINYVLVAV
VGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDADEQQPDPLRGARPAELRGEVTLEK
VSFRYEPEKPLIEDLSLSVRPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDIAAMSRDDLRAGIGMVLQDTW
LFGGTIAENIAYGASREVTREEIEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMAGLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLLARGAYARLYAAQFAQAVAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=854664 V1460_RS28925 WP_338676544.1 6421778..6423703(+) (rcrQ) [Streptomyces sp. SCSIO 30461]
ATGGCCGGTCCTGGTGGACGCATGATGATGCCCAACGCGGGCGAACGGTCCATGGACTTCAAGGGCTCGGGAAAGCGACT
GCTCGCTCAGCTCGCCCCGGAGCGCGGCACCCTGTGGACGATGCTCGGGGCCGCGGTGCTGAGCGTCGCTGCCGCGGTGG
TCGGGCCGAAGATCCTCGGGCAGGCGACGGACCTGGTCTTCGCCGGAGTCGTCGGACGGGAGATAGCCGGTGGCACCAGC
AAGGAGCAGGCGCTCGACGCCCTCCGTGCCCGGGGCGACAGCGGGCTCGCGGACATGCTCTCCGGGGTGGACTTCACCCC
GGGCCGGGGCATCGACTTCACCTCGGTCGGGCACGTGCTGCTGATCGCGCTCGCCGTGTACGTGGGTGCCGGCCTGCTGA
TGCTGGTGTCGACCCGGCTGTCGATCCGGGTGATAAACCGCACCGTCTACCGGATGCGGGAGGACGTACAGGCGAAACTG
TCGCGGCTGCCGCTGTCGTACTTCGACAAGGCGAAACGCGGAGAGGTGCTGAGCCGGGCGACCAACGACCTGGACAACAT
CTCGCAGACCATGCAGCAGTCGATGGGGCAGCTGATCAACTCGCTGCTGACCATCGTGGGCGTGCTGGCGATGATGCTCT
GGATCTCGCCGCTGCTGGCGCTGGTGGCGCTGCTGACCGTGCCGCTGTCGGTGTTCGTGGCAGCGAAGGTGGGCAAGCGC
TCCCAGCCGCAGTTCGTGCAGCAGTGGAAGTCCACGGGCAGCCTGAACGCGCACATCGAGGAGATGTACTCCGGCCACAC
CCTGGTGAAGGTGTTCGGACGCCAGCAGGAGTCGGCCGAGGACTTCGCCGAACAAAACGAGGCGCTGTACGAGGCAGGGT
TCCGGGCGCAGTTCAACAGCGGCGTCATGCAGCCGCTGATGTACTTCATCTCGAACATCAACTACGTGCTGGTGGCTGTG
GTCGGCGGGCTGCGGGTCGCCTCGGGCACGCTGTCGATCGGCGACGTCCAGGCGTTCATACAGTATTCGCGGCAGTTCTC
GATGCCTCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCCGGGGTGGCTTCGGCCGAGCGGATCTTCGAGCTGC
TGGACGCCGATGAGCAGCAGCCCGACCCGCTGCGCGGCGCCCGCCCTGCGGAGCTGCGCGGGGAGGTCACGCTGGAGAAG
GTCTCCTTCCGCTACGAGCCGGAGAAGCCGCTCATCGAGGATCTGTCCCTGTCCGTCCGGCCGGGCCAGACGGTGGCGAT
CGTCGGGCCGACGGGCGCCGGCAAGACCACGCTGGTCAATCTGCTGATGCGGTTCTACGAGGTGACGGGCGGCCGGATCG
CACTCGACGGCGTCGACATCGCCGCCATGTCCCGCGACGACCTGCGGGCCGGAATCGGCATGGTGCTGCAGGACACCTGG
CTGTTCGGCGGCACGATCGCCGAGAACATCGCCTACGGCGCGTCCCGCGAGGTCACCCGGGAGGAGATCGAGGAGGCGGC
GCGGGCAGCGCACGCCGACCGCTTCATCCGCACCCTGCCGGACGGCTACGACACGGTCATCGACGACGAGGGCTCGGGAG
TCAGCGCCGGTGAGAAGCAGCTGATCACCATCGCACGGGCGTTCCTGTCCGATCCGGTGATCCTGGTGCTGGACGAGGCG
ACCAGCTCGGTGGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCAGGCCTGGCCCACGGGCGTACGTCGTTCGT
GATCGCGCACCGGCTCTCCACCATCCGGGACGCGGATGTGATCTTGGTGATGGAGAATGGCTCCATCGTCGAACAGGGCA
CACACGACGAACTGCTGCTCGCACGGGGCGCGTACGCCCGGCTCTACGCGGCGCAGTTCGCACAGGCGGTGGCCGAAGTC
GACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(43-350)

ABC transporter (ABC_tran)

(413-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.711

97.036

0.385