Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   V1460_RS28920 Genome accession   NZ_CP146101
Coordinates   6420045..6421778 (+) Length   577 a.a.
NCBI ID   WP_338676543.1    Uniprot ID   -
Organism   Streptomyces sp. SCSIO 30461     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6415045..6426778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1460_RS28885 (V1460_28885) - 6415981..6416724 (+) 744 WP_338676539.1 methyltransferase domain-containing protein -
  V1460_RS28890 (V1460_28890) - 6416963..6417283 (-) 321 WP_338676540.1 MafI family immunity protein -
  V1460_RS28910 (V1460_28910) - 6418088..6418390 (+) 303 WP_338676541.1 YtxH domain-containing protein -
  V1460_RS28915 (V1460_28915) - 6418458..6419903 (+) 1446 WP_338676542.1 FGGY family carbohydrate kinase -
  V1460_RS28920 (V1460_28920) rcrP 6420045..6421778 (+) 1734 WP_338676543.1 ABC transporter ATP-binding protein Regulator
  V1460_RS28925 (V1460_28925) rcrQ 6421778..6423703 (+) 1926 WP_338676544.1 ABC transporter ATP-binding protein Regulator
  V1460_RS28930 (V1460_28930) - 6423783..6424019 (+) 237 WP_338676545.1 hypothetical protein -
  V1460_RS28935 (V1460_28935) - 6424007..6425260 (-) 1254 WP_407077547.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62342.55 Da        Isoelectric Point: 5.2516

>NTDB_id=854663 V1460_RS28920 WP_338676543.1 6420045..6421778(+) (rcrP) [Streptomyces sp. SCSIO 30461]
MLIRLLRTFLRPYSKPLALLVALQLLQTSASLYLPTLNADIIDNGVVKGDTGYILAFGAIMVGISVVQVLCNIGAVYFGA
RTSSALGRDVRAAVFARVQAFSAREVARFGAPSLITRTTNDVQQVQMLVLMSFTLMVSAPIMCIGGIALALALDVPLSAV
LLAVVPVLGVSVMLIVKRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDPYEQERFRGANTELTDVAVSTGRLMAL
MFPTVMTVVNVSSVAVVWFGAQRIDSGAMEIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIQEVLDTESSVVP
PADPVRKLARRGHLEVRGAQFRYPGAEEPVLVDVELVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTGGAVLVDGVDVR
ELDPALMAQTVGLVPQKPYLFSGTVATNLRYGNPDATDDELWQALDVAQAAEFVRELDGGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALSLETADATVVIVAQRVSTIRGADRIVVLDEGRIVGTGRHHELMESN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=854663 V1460_RS28920 WP_338676543.1 6420045..6421778(+) (rcrP) [Streptomyces sp. SCSIO 30461]
GTGCTCATAAGACTGCTGCGGACGTTCCTGCGTCCTTACTCCAAACCCCTCGCCCTGCTGGTGGCGCTCCAGCTGCTCCA
GACCAGCGCCAGCCTCTATCTGCCGACACTGAACGCGGACATCATCGACAACGGTGTCGTCAAGGGCGATACCGGGTACA
TCCTGGCGTTCGGCGCGATCATGGTCGGCATCAGCGTCGTCCAGGTGCTGTGCAACATCGGGGCCGTCTACTTCGGCGCC
AGGACCTCGTCCGCACTGGGCCGGGACGTACGGGCGGCCGTCTTCGCACGCGTCCAGGCGTTCTCAGCCCGCGAGGTGGC
GCGTTTCGGGGCTCCTTCGCTGATCACCCGGACGACCAATGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGTCGTTCA
CGCTGATGGTGTCCGCGCCGATCATGTGCATCGGCGGTATCGCGCTGGCCCTCGCCCTCGATGTGCCGCTGTCGGCAGTG
CTGTTGGCGGTCGTGCCGGTGCTCGGTGTCTCGGTCATGCTGATCGTGAAGCGCATGCGTCCGCTGTTCCGAACCATGCA
GGAGCGGCTGGACACGGTGAACCGGGTGCTGCGGGAGCAGATCACGGGCAATCGGGTGATCCGGGCGTTCGTACGGGACC
CGTACGAACAGGAGCGGTTCCGCGGAGCCAACACCGAGTTGACCGATGTGGCCGTGTCGACCGGCCGGCTGATGGCGCTG
ATGTTCCCGACGGTGATGACGGTCGTGAACGTGTCCAGTGTCGCGGTGGTCTGGTTCGGGGCCCAGCGCATCGACAGTGG
CGCGATGGAAATCGGCGCGCTCACCGCCTTTCTCGCCTATCTGATGCAGATAGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGAGGGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGACACGGAGTCGAGCGTGGTGCCT
CCGGCCGATCCGGTGCGGAAGCTGGCTCGGCGCGGCCATCTGGAGGTCAGGGGCGCGCAGTTCCGCTATCCGGGTGCCGA
GGAGCCGGTCCTGGTGGACGTGGAACTGGTGGCTCGTCCGGGTGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGCA
AGTCGACGCTGCTCGGGCTCGTACCCAGGCTGTTCGACGTCACCGGCGGCGCGGTGCTGGTCGACGGTGTCGACGTACGG
GAGCTGGACCCTGCGCTGATGGCACAGACCGTGGGACTCGTCCCCCAGAAGCCGTACCTGTTCTCCGGCACGGTGGCCAC
GAACCTGCGGTACGGGAATCCCGACGCGACCGACGATGAGTTGTGGCAGGCGCTCGACGTGGCCCAGGCGGCCGAGTTCG
TACGCGAGCTCGACGGCGGGCTGAACGCTCCGATCGCACAGGGCGGCACCAATGTGTCGGGCGGCCAGCGGCAGCGACTG
GCGATAGCGCGCACGCTGGTCCAGCGGCCCGAGATCTATCTGTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACCGA
CGCCGCGCTGCGCGGGGCGCTCTCCCTGGAGACGGCCGACGCGACCGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GTGGAGCCGACCGGATCGTGGTGCTGGACGAGGGCCGCATTGTCGGTACCGGGCGCCATCATGAGCTGATGGAGAGCAAT
GAGACATACCGGGAGATCGTGCTCTCCCAGCTGACCGAGGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(353-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.373

99.48

0.392