Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   V1460_RS08815 Genome accession   NZ_CP146101
Coordinates   1936838..1939060 (+) Length   740 a.a.
NCBI ID   WP_338673165.1    Uniprot ID   -
Organism   Streptomyces sp. SCSIO 30461     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1931838..1944060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1460_RS08795 (V1460_08795) thiD 1932187..1932993 (+) 807 WP_338673164.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  V1460_RS08800 (V1460_08800) rpmB 1933111..1933296 (-) 186 WP_003957616.1 50S ribosomal protein L28 -
  V1460_RS08805 (V1460_08805) - 1933582..1935213 (+) 1632 WP_338677975.1 DAK2 domain-containing protein -
  V1460_RS08810 (V1460_08810) - 1935758..1936717 (+) 960 WP_338677976.1 threonine/serine dehydratase -
  V1460_RS08815 (V1460_08815) recG 1936838..1939060 (+) 2223 WP_338673165.1 ATP-dependent DNA helicase RecG Machinery gene
  V1460_RS08820 (V1460_08820) rsmD 1939156..1939740 (+) 585 WP_338673166.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  V1460_RS08825 (V1460_08825) coaD 1939737..1940246 (+) 510 WP_338673167.1 pantetheine-phosphate adenylyltransferase -
  V1460_RS08830 (V1460_08830) - 1940378..1941493 (+) 1116 WP_338673168.1 ATP synthase F0 subunit B -
  V1460_RS08835 (V1460_08835) - 1941649..1942302 (+) 654 WP_338677977.1 DUF177 domain-containing protein -
  V1460_RS08840 (V1460_08840) rpmF 1942305..1942478 (+) 174 WP_026165248.1 50S ribosomal protein L32 -
  V1460_RS08845 (V1460_08845) rnc 1942498..1943328 (+) 831 WP_338673169.1 ribonuclease III -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 79528.06 Da        Isoelectric Point: 6.3513

>NTDB_id=854639 V1460_RS08815 WP_338673165.1 1936838..1939060(+) (recG) [Streptomyces sp. SCSIO 30461]
MDRVSALLALDEPLKTSLGPATAKVMAESLGLRTVGDLLHHYPRRYEERGQLTRLAELPLDEHVTVVAQVADARVHTFNG
GRGQRLEITITDGSGRLQLVFFGRGVHKPHKDLPPGSRAMFAGKVSMFNRKLQLAHPSYERLPSDGTDSGEGAVSAFAGK
LIPIYPACKGLESWKIAKAVDAVLPRVHEALDPLPPALREGRGFVSLPEALLKIHRPAGKADVEEARARLKWDEAFVLQV
ALARRRHADAQLPAVARRPTPDGLLSAFDARLPFTLTDGQRKVSAEIFGDLATEHPMHRLLQGEVGSGKTMVALRAMLAV
VDAGGQAAMLAPTEVLAQQHHRSIAEMMGDLAEGGMLGGAEHATKVVLLTGSMGAAARRHALLDLATGEAGIVIGTHALI
EDKVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPA
ADKPHFLARAWERVREEVEGGHQAYVVCPRIGDAVDESQPQSAEARRKPADDEAEKRPPLAVLDMAEQLAGGPLSGLRVE
VLHGRMAPDDKDGVMRRFAAGELDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVTEMP
EASPARARLGAVAATLDGFELSRIDLEQRREGDVLGQAQSGARSSLRVLAVIEDEEVIAAAREEAVAVVAADPDLERFPE
LRTALDALLDADREQYLDKG

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=854639 V1460_RS08815 WP_338673165.1 1936838..1939060(+) (recG) [Streptomyces sp. SCSIO 30461]
ATGGACCGCGTGTCCGCACTGCTCGCACTGGATGAACCCCTGAAGACCAGCCTCGGCCCCGCGACGGCCAAGGTCATGGC
GGAGAGCCTCGGCCTGCGCACCGTGGGCGATCTTCTGCACCACTATCCCCGGCGCTACGAGGAACGCGGGCAGCTCACCC
GCCTCGCAGAGCTTCCGCTGGACGAGCACGTCACGGTCGTCGCCCAGGTCGCGGACGCACGCGTGCACACGTTCAACGGC
GGCCGGGGGCAGCGCCTGGAGATCACCATCACCGACGGCAGCGGGCGGCTGCAGCTGGTGTTCTTCGGACGGGGCGTCCA
CAAGCCCCACAAGGACCTCCCACCGGGCAGCCGCGCGATGTTCGCCGGCAAGGTGTCCATGTTCAACCGCAAGCTCCAGC
TCGCCCACCCCAGCTACGAGCGGCTGCCATCCGACGGCACGGACAGCGGTGAAGGGGCGGTCAGCGCGTTCGCCGGGAAG
CTCATCCCGATCTATCCCGCGTGCAAGGGCCTGGAGTCCTGGAAGATCGCCAAGGCCGTGGACGCGGTGCTGCCCCGGGT
ACACGAGGCGCTCGATCCGCTACCGCCCGCGCTGCGTGAGGGGCGCGGCTTCGTGTCACTTCCCGAGGCCCTGCTCAAGA
TCCACCGGCCCGCTGGCAAGGCGGATGTGGAGGAGGCCAGGGCGCGGCTGAAGTGGGACGAGGCCTTCGTGCTCCAGGTC
GCCCTCGCTCGGCGGCGCCACGCGGACGCCCAGCTTCCCGCCGTGGCCCGCAGGCCCACCCCCGACGGGCTGCTGAGCGC
CTTCGACGCCCGGCTGCCGTTCACTCTCACCGACGGCCAGCGGAAGGTCTCCGCCGAGATCTTCGGCGATCTGGCCACCG
AACACCCCATGCACCGGCTGCTCCAGGGAGAAGTGGGCTCCGGCAAGACGATGGTCGCGCTGCGCGCGATGCTCGCCGTC
GTGGACGCGGGCGGTCAGGCGGCGATGCTCGCCCCCACCGAAGTCCTCGCGCAGCAGCACCACCGTTCGATCGCGGAGAT
GATGGGCGACCTCGCCGAAGGTGGCATGCTCGGCGGTGCCGAGCACGCCACCAAGGTGGTGCTGCTCACCGGTTCCATGG
GCGCAGCCGCCCGCAGGCACGCCCTGCTCGACCTGGCGACCGGAGAGGCCGGGATCGTCATCGGCACGCACGCGCTGATC
GAGGACAAGGTCCAGTTCCACGATCTTGGACTGGTCGTCGTGGACGAGCAGCACCGCTTCGGCGTGGAGCAGCGGGACGC
ACTGCGCGGCAAGGGGAAGCAGCCGCCCCATTTGCTGGTCATGACCGCCACCCCGATTCCCCGCACGGTCGCCATGACGG
TCTTCGGGGATCTGGAGACCTCCGTGCTCGACCAGTTGCCCGCCGGGCGCTCGCCCATCGCGTCGCATGTGGTCCCGGCC
GCCGACAAACCCCACTTCCTGGCGCGGGCCTGGGAGCGGGTGCGCGAGGAGGTCGAGGGCGGCCACCAGGCCTATGTGGT
CTGCCCGCGGATCGGGGATGCCGTCGACGAGTCCCAGCCCCAGTCCGCGGAGGCCCGGCGGAAGCCCGCGGATGACGAGG
CCGAGAAGCGTCCCCCGCTCGCCGTGCTGGACATGGCGGAGCAGCTGGCCGGCGGCCCGCTGAGCGGACTGCGCGTGGAG
GTGCTGCACGGTCGCATGGCGCCCGACGACAAGGACGGCGTCATGCGCCGCTTCGCCGCCGGCGAGCTGGACGTGCTGGT
GGCCACGACCGTCATCGAGGTCGGGGTGAACGTACCCAACGCGACCGCCATGGTGATCATGGACGCGGACCGCTTCGGTG
TCTCGCAACTGCACCAGTTGCGCGGCCGGGTCGGTCGCGGCTCGGCTCCAGGCCTCTGCCTGCTGGTCACCGAGATGCCG
GAAGCGAGCCCGGCACGTGCCAGGCTCGGCGCGGTGGCGGCCACGCTGGACGGCTTCGAACTGTCCCGTATCGATCTCGA
GCAGCGCCGCGAAGGCGATGTGCTGGGTCAGGCGCAGTCCGGCGCCCGATCGTCGCTGCGGGTGCTCGCCGTCATCGAGG
ACGAGGAGGTGATCGCCGCCGCCCGGGAGGAGGCCGTGGCGGTGGTCGCGGCCGATCCTGACCTGGAGCGGTTCCCGGAG
TTGCGTACCGCGCTCGACGCACTGCTCGACGCGGACCGCGAGCAGTACCTGGACAAGGGCTGA

Domains

Predicted by InterProScan.

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(64-140)

Helicase conserved C-terminal domain (Helicase_C)

(551-627)

DEAD/DEAH box helicase (DEAD)

(297-450)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(655-716)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

37.819

95.405

0.361