Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   V1460_RS06840 Genome accession   NZ_CP146101
Coordinates   1488417..1489394 (+) Length   325 a.a.
NCBI ID   WP_338672752.1    Uniprot ID   -
Organism   Streptomyces sp. SCSIO 30461     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1483417..1494394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1460_RS06825 (V1460_06825) - 1484779..1486416 (+) 1638 WP_338672747.1 ABC transporter substrate-binding protein -
  V1460_RS06830 (V1460_06830) - 1486482..1487405 (+) 924 WP_338672749.1 ABC transporter permease -
  V1460_RS06835 (V1460_06835) - 1487398..1488402 (+) 1005 WP_338672751.1 ABC transporter permease -
  V1460_RS06840 (V1460_06840) amiE 1488417..1489394 (+) 978 WP_338672752.1 ABC transporter ATP-binding protein Regulator
  V1460_RS06845 (V1460_06845) - 1489387..1490448 (+) 1062 WP_338672753.1 dipeptide ABC transporter ATP-binding protein -
  V1460_RS06850 (V1460_06850) - 1490449..1491057 (-) 609 WP_338672754.1 GNAT family N-acetyltransferase -
  V1460_RS06855 (V1460_06855) - 1491160..1493235 (-) 2076 WP_338672755.1 penicillin acylase family protein -
  V1460_RS06860 (V1460_06860) - 1493298..1494026 (+) 729 WP_338672756.1 siderophore-interacting protein -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 35410.09 Da        Isoelectric Point: 6.6064

>NTDB_id=854630 V1460_RS06840 WP_338672752.1 1488417..1489394(+) (amiE) [Streptomyces sp. SCSIO 30461]
MLLEVRDLHVEFRTRDGVAKAVDGVSYAVDAGETLAVLGESGSGKSVTAQAVMGILDGPPGRITAGEVLFQGRDLLKLRE
DERRAVRGARMAMIFQDALSALNPVLTVGEQLGEMFTVHRGMSRKAAKAKAVELMDKVRIPAAAARVGDYPHQFSGGMRQ
RIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQREYNMGLILITHDLGVVADVADKIAVMYAGRIVETAPVHE
LYKAPAHPYTRGLLDSIPRLDQKGRELYAIKGLPPNLLRVPTGCAFNPRCPKARDVCLTDEPELFAVDRPGRSSACFFWR
ECLHG

Nucleotide


Download         Length: 978 bp        

>NTDB_id=854630 V1460_RS06840 WP_338672752.1 1488417..1489394(+) (amiE) [Streptomyces sp. SCSIO 30461]
ATGCTGCTCGAAGTACGCGACCTGCACGTGGAGTTCCGTACCAGGGACGGAGTCGCCAAGGCCGTCGACGGCGTCAGCTA
CGCCGTCGACGCGGGCGAGACCCTGGCCGTGCTGGGTGAGTCCGGCTCAGGGAAGTCCGTCACGGCCCAGGCCGTCATGG
GCATCCTCGACGGCCCGCCGGGCCGGATCACCGCCGGTGAGGTGCTGTTCCAGGGCCGGGACCTGCTGAAGCTCCGTGAG
GACGAGCGGCGCGCCGTCCGGGGTGCCCGGATGGCGATGATCTTCCAGGACGCGCTCTCCGCCCTCAACCCCGTGCTGAC
CGTCGGTGAACAACTGGGGGAGATGTTCACCGTGCACCGAGGCATGTCCAGGAAAGCGGCCAAGGCCAAGGCCGTCGAGC
TGATGGACAAGGTCAGGATCCCGGCAGCCGCCGCGCGTGTCGGCGACTACCCGCACCAGTTCTCGGGCGGTATGCGTCAG
CGGATCATGATCGCCATGGCGCTGGCGCTCGAGCCGGACCTGATCATCGCGGACGAGCCGACCACCGCGCTCGACGTGAC
CGTGCAGGCCCAGGTGATGGACCTGCTCGCGGAGCTCCAGCGCGAGTACAACATGGGTCTGATCCTGATCACCCACGACC
TCGGTGTCGTCGCCGATGTCGCGGACAAGATCGCGGTGATGTACGCGGGCCGGATCGTGGAGACCGCGCCCGTGCACGAG
CTCTACAAGGCGCCCGCCCACCCGTACACCCGTGGCCTCCTCGACTCCATCCCGCGCCTGGACCAGAAGGGCCGGGAGCT
GTACGCGATCAAGGGTCTGCCACCCAACCTGCTCCGCGTCCCGACCGGCTGCGCCTTCAACCCGCGCTGCCCGAAGGCCA
GGGACGTGTGCCTGACGGACGAGCCGGAGCTGTTCGCCGTGGACCGGCCGGGCAGGTCGAGTGCCTGCTTCTTCTGGAGG
GAGTGCCTCCATGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

50.162

95.077

0.477
  amiE Streptococcus thermophilus LMG 18311

48.701

94.769

0.462
  amiE Streptococcus thermophilus LMD-9

48.701

94.769

0.462
  oppD Streptococcus mutans UA159

48.039

94.154

0.452
  amiF Streptococcus thermophilus LMG 18311

36.991

98.154

0.363