Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   V1460_RS06815 Genome accession   NZ_CP146101
Coordinates   1482332..1483390 (+) Length   352 a.a.
NCBI ID   WP_338672744.1    Uniprot ID   -
Organism   Streptomyces sp. SCSIO 30461     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1477332..1488390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1460_RS06800 (V1460_06800) - 1478637..1480274 (+) 1638 WP_338672742.1 ABC transporter substrate-binding protein -
  V1460_RS06805 (V1460_06805) - 1480445..1481377 (+) 933 WP_338677929.1 ABC transporter permease -
  V1460_RS06810 (V1460_06810) - 1481370..1482320 (+) 951 WP_338672743.1 ABC transporter permease -
  V1460_RS06815 (V1460_06815) amiE 1482332..1483390 (+) 1059 WP_338672744.1 ABC transporter ATP-binding protein Regulator
  V1460_RS06820 (V1460_06820) - 1483383..1484531 (+) 1149 WP_338672745.1 dipeptide ABC transporter ATP-binding protein -
  V1460_RS06825 (V1460_06825) - 1484779..1486416 (+) 1638 WP_338672747.1 ABC transporter substrate-binding protein -
  V1460_RS06830 (V1460_06830) - 1486482..1487405 (+) 924 WP_338672749.1 ABC transporter permease -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38425.41 Da        Isoelectric Point: 6.4303

>NTDB_id=854629 V1460_RS06815 WP_338672744.1 1482332..1483390(+) (amiE) [Streptomyces sp. SCSIO 30461]
MTTIDKNAPVPAQRGGEDHEDALLEVRDLHVEFHTRDGVAKAVNGVNYSVKAGETLAVLGESGSGKSVTAQAVMGILDMP
PGKIPQGEILFRGQDMLKMSFEERRQIRGQKIAMIFQDALSSLNPVLTVGYQLGEMFRVHQGLSKKEAKAKAVELMDKVK
IPAAAARVGDYPHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQREYNMGLILITHDLGVVAD
VADKIAVMYAGRIVETAPVHELYKAPAHPYTRGLLDSIPRLDQKGRELYAIKGLPPNLLRVPTGCAFNPRCPKAEDICRT
EIPALHPVSEQDGTELLGRGSACHFWKETIHG

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=854629 V1460_RS06815 WP_338672744.1 1482332..1483390(+) (amiE) [Streptomyces sp. SCSIO 30461]
GTGACCACCATCGACAAGAACGCGCCCGTCCCCGCCCAGCGGGGCGGCGAGGACCATGAAGACGCTCTGCTCGAAGTCCG
TGACCTGCACGTGGAGTTCCATACCCGGGACGGTGTGGCCAAGGCAGTCAACGGCGTCAACTACTCGGTGAAGGCCGGGG
AGACGCTCGCCGTGCTGGGTGAGTCCGGCTCAGGCAAGTCCGTCACCGCGCAGGCCGTCATGGGCATCCTCGACATGCCC
CCCGGGAAGATCCCGCAGGGCGAGATCCTCTTCCGCGGCCAGGACATGCTCAAGATGTCCTTCGAGGAGCGCCGGCAGAT
TCGTGGCCAGAAGATCGCCATGATCTTCCAGGACGCGCTGTCATCGCTCAACCCCGTGCTGACCGTCGGCTACCAGCTCG
GCGAGATGTTCCGGGTGCACCAGGGCCTCTCCAAGAAGGAGGCCAAGGCCAAGGCCGTCGAGCTGATGGACAAGGTCAAG
ATCCCGGCAGCCGCCGCGCGTGTCGGCGACTACCCGCACCAGTTCTCGGGCGGTATGCGTCAGCGGATCATGATCGCCAT
GGCGCTGGCGCTCGAGCCGGACCTGATCATCGCGGACGAGCCGACCACCGCGCTCGACGTGACCGTGCAGGCCCAGGTGA
TGGACCTGCTCGCGGAGCTCCAGCGCGAGTACAACATGGGTCTGATCCTGATCACCCACGACCTCGGTGTCGTCGCCGAT
GTCGCGGACAAGATCGCGGTGATGTACGCGGGCCGGATCGTGGAGACCGCGCCCGTGCACGAGCTCTACAAGGCGCCCGC
CCACCCGTACACCCGTGGCCTCCTCGACTCCATCCCGCGCCTGGACCAGAAGGGCCGGGAGCTGTACGCGATCAAGGGTC
TGCCACCCAACCTGCTCCGCGTCCCGACCGGCTGCGCCTTCAACCCGCGCTGCCCGAAGGCCGAGGACATCTGCCGCACG
GAGATTCCCGCTCTGCACCCGGTGAGCGAGCAGGACGGAACCGAGCTGCTCGGCCGCGGAAGCGCGTGCCACTTCTGGAA
GGAGACGATCCATGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(44-202)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(254-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

51.495

85.511

0.44
  amiE Streptococcus thermophilus LMG 18311

50.831

85.511

0.435
  amiE Streptococcus thermophilus LMD-9

50.831

85.511

0.435
  oppD Streptococcus mutans UA159

48.553

88.352

0.429