Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   V2W30_RS34820 Genome accession   NZ_CP146022
Coordinates   7584295..7585248 (+) Length   317 a.a.
NCBI ID   WP_338703877.1    Uniprot ID   A0ACD5APS8
Organism   Streptomyces sp. Q6     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 7579295..7590248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2W30_RS34800 (V2W30_34800) - 7579576..7580634 (-) 1059 WP_338702574.1 LacI family DNA-binding transcriptional regulator -
  V2W30_RS34805 (V2W30_34805) - 7580794..7582428 (+) 1635 WP_338702575.1 ABC transporter substrate-binding protein -
  V2W30_RS34810 (V2W30_34810) - 7582425..7583378 (+) 954 WP_338702576.1 ABC transporter permease -
  V2W30_RS34815 (V2W30_34815) - 7583375..7584241 (+) 867 WP_338702577.1 ABC transporter permease -
  V2W30_RS34820 (V2W30_34820) amiE 7584295..7585248 (+) 954 WP_338703877.1 ABC transporter ATP-binding protein Regulator
  V2W30_RS34825 (V2W30_34825) - 7585317..7586081 (+) 765 WP_338703878.1 ATP-binding cassette domain-containing protein -
  V2W30_RS34830 (V2W30_34830) - 7586302..7588475 (-) 2174 Protein_6873 hypothetical protein -
  V2W30_RS34835 (V2W30_34835) - 7588565..7589086 (-) 522 WP_338702578.1 hypothetical protein -
  V2W30_RS34840 (V2W30_34840) - 7589228..7589962 (-) 735 WP_338702579.1 DUF4232 domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 33277.28 Da        Isoelectric Point: 7.3499

>NTDB_id=854615 V2W30_RS34820 WP_338703877.1 7584295..7585248(+) (amiE) [Streptomyces sp. Q6]
MTDVSVRLGDGTGAARPILDGVSLRVLPGETVGLVGESGSGKSVACRSVLGLLPGGARASGRIRVSGRDVLTMSPADLAA
LRTREVAMVFQDPRASVNPLRRVGDFLTEGLRAGGTPPAEAMARAEELLTAVGIRDPRGALRRHPHQFSGGMLQRVVIAA
ALAAEPALLLADEPTTALDVTTQAEIIAILTRLRAERGTGLLFVTHDLELAAAICDRVYVMYAGRIVETRSTDELFDRPR
HPYTAGLLACTPRIEPDAPPPRPIPGRPVSLAEAPPGCAFADRCAHAVARCTQEAPVLARHGDGLAACHRADEGIAL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=854615 V2W30_RS34820 WP_338703877.1 7584295..7585248(+) (amiE) [Streptomyces sp. Q6]
ATGACGGACGTGAGCGTCCGGCTCGGCGACGGGACGGGCGCGGCCCGCCCGATCCTGGACGGCGTGAGCCTGCGGGTGCT
GCCGGGGGAGACCGTGGGACTCGTCGGCGAGTCGGGATCCGGCAAATCGGTGGCCTGCCGCAGCGTCCTCGGACTGCTCC
CCGGCGGCGCGCGGGCGAGCGGCCGCATCCGGGTCTCGGGCCGCGACGTCCTCACCATGAGCCCCGCCGACCTCGCCGCA
CTGCGCACCCGCGAGGTGGCGATGGTCTTCCAGGACCCGCGCGCCTCCGTCAACCCGCTGCGCCGCGTCGGCGACTTCCT
CACCGAAGGACTCCGCGCCGGCGGCACCCCGCCCGCCGAGGCCATGGCCCGCGCCGAGGAACTCCTCACCGCCGTCGGCA
TCCGCGACCCGCGCGGAGCGCTGCGCCGCCACCCGCACCAGTTCTCCGGCGGCATGCTGCAACGCGTCGTCATCGCCGCC
GCGCTCGCCGCCGAACCCGCGCTGCTCCTCGCCGACGAACCGACCACCGCCCTCGACGTCACCACGCAGGCGGAGATCAT
CGCGATCCTCACCCGGCTGCGGGCGGAGCGCGGCACCGGGCTGCTCTTCGTCACCCACGACCTCGAACTCGCCGCCGCGA
TCTGCGACCGGGTCTACGTGATGTACGCGGGCCGCATCGTCGAGACCCGCTCCACCGACGAACTGTTCGACCGGCCCCGC
CACCCGTACACGGCGGGCCTGCTCGCCTGCACCCCGCGCATCGAACCCGACGCGCCGCCGCCCCGACCCATCCCCGGACG
CCCCGTGTCGCTGGCCGAGGCGCCGCCGGGCTGCGCGTTCGCGGACCGCTGCGCCCACGCCGTAGCGCGCTGCACCCAGG
AGGCGCCCGTGCTCGCCCGGCACGGCGACGGCCTCGCCGCCTGCCACCGGGCCGACGAAGGGATCGCCCTGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-175)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(227-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

44.404

87.382

0.388
  amiE Streptococcus thermophilus LMD-9

44.404

87.382

0.388
  oppD Streptococcus mutans UA159

39.159

97.476

0.382
  amiE Streptococcus salivarius strain HSISS4

43.682

87.382

0.382