Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QTO83_RS28100 Genome accession   NZ_CP129616
Coordinates   5895102..5896622 (+) Length   506 a.a.
NCBI ID   WP_064343648.1    Uniprot ID   -
Organism   Klebsiella oxytoca strain NMI2990_17     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5890102..5901622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTO83_RS28080 (QTO83_028075) ilvE 5891667..5892596 (-) 930 WP_004107600.1 branched-chain-amino-acid transaminase -
  QTO83_RS28085 (QTO83_028080) ilvM 5892613..5892870 (-) 258 WP_004107599.1 acetolactate synthase 2 small subunit -
  QTO83_RS28090 (QTO83_028085) ilvG 5892867..5894513 (-) 1647 WP_004107597.1 acetolactate synthase 2 catalytic subunit -
  QTO83_RS28095 (QTO83_028090) ilvL 5894653..5894751 (-) 99 WP_001311244.1 ilv operon leader peptide -
  QTO83_RS28100 (QTO83_028095) comM 5895102..5896622 (+) 1521 WP_064343648.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QTO83_RS28105 (QTO83_028100) - 5896646..5896984 (-) 339 WP_004097464.1 DUF413 domain-containing protein -
  QTO83_RS28110 (QTO83_028105) hdfR 5897103..5897924 (+) 822 WP_064343647.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55394.80 Da        Isoelectric Point: 8.4834

>NTDB_id=854580 QTO83_RS28100 WP_064343648.1 5895102..5896622(+) (comM) [Klebsiella oxytoca strain NMI2990_17]
MSLAIVYTRAALGIGAPLITVEVHISNGLPGLTMVGLPETTVREARDRVRSAIINSGYAWPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTPRLNQYEFVGELALTGALRGVPGAISSAMEAIRAGRKIIVSHENSPEVGLIGGSDCLIAAHL
QEVCAFLEGKNPLNHPIPEAETSDESSLDLREVIGQQQGKRALEIIAAGGHNLLMIGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAILSLVNSSYAMKNWRRRPFRAPHHSASMAAMVGGGSIPTPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GVIHISRTRAKIDYPARFQLIAAMNPSPTGHYQGQHNRASPEQTLRYLARLSGPFLDRFDLSLEIPLPPPGVLSRGTNEE
ESSACVRQRVLAAHERQLSRQKKLNANLGNNEMKIWCQLHQDDAIWLEQTLTQLGLSIRAWQRLLKVSRTIADIEKVDRI
ERRHLQEALGYRAIDRMLSHLQKMMT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=854580 QTO83_RS28100 WP_064343648.1 5895102..5896622(+) (comM) [Klebsiella oxytoca strain NMI2990_17]
ATGTCACTCGCCATTGTTTACACCCGCGCCGCTCTTGGGATCGGCGCCCCCCTTATCACAGTTGAAGTTCATATCAGCAA
CGGACTCCCTGGCCTGACGATGGTAGGGTTGCCTGAAACAACGGTCAGAGAAGCGCGTGACCGGGTACGTAGTGCGATTA
TCAACAGCGGCTACGCCTGGCCGGCGAAAAAAATCACCATCAATCTGGCGCCAGCCGATTTGCCAAAAGAAGGGGGAAGA
TATGATTTACCTATCGCTCTCGCGCTTCTGGTGGCCTCTGAGCAGCTAAATACTCCCAGGCTAAATCAATACGAGTTTGT
CGGCGAGCTGGCGCTTACAGGCGCTCTACGTGGCGTTCCTGGGGCTATATCCAGCGCGATGGAGGCGATAAGAGCGGGCA
GAAAGATTATTGTCTCTCATGAGAATTCTCCTGAGGTGGGTTTAATCGGCGGCAGTGACTGTCTTATCGCCGCCCATCTT
CAGGAGGTCTGCGCCTTTCTGGAGGGAAAAAACCCGCTAAATCATCCTATTCCGGAAGCGGAGACCTCAGATGAGTCTTC
ATTAGACTTGCGCGAGGTTATTGGTCAGCAGCAAGGAAAGCGAGCGCTGGAAATTATCGCTGCAGGCGGACATAACCTGC
TGATGATAGGCCCACCCGGCACAGGGAAAACGATGCTTGCGAGTCGGCTGCCTGGGCTACTACCGCCGCTGAGTAACCAG
GAAGCGCTGGAAAGCGCGGCAATACTTAGCCTGGTCAATTCCAGTTATGCGATGAAAAACTGGCGCCGCAGGCCATTTCG
AGCTCCGCATCATAGCGCGTCCATGGCTGCGATGGTGGGTGGCGGCTCTATTCCAACACCGGGAGAGATCTCTCTCGCTC
ATAATGGCGTGCTGTTCCTGGATGAGCTGCCCGAATTTGAACGCAGGGTTCTGGATGCATTAAGAGAACCGATTGAATCC
GGGGTAATCCATATCTCCCGCACGCGCGCGAAAATCGATTATCCCGCCCGTTTTCAGCTTATTGCAGCAATGAATCCCAG
CCCCACGGGCCACTATCAGGGTCAGCATAATCGCGCATCTCCAGAACAGACGCTACGCTACCTGGCCCGTTTATCTGGCC
CATTTCTTGACCGTTTCGATCTCTCACTGGAAATTCCTCTGCCGCCGCCGGGGGTGCTTAGCCGGGGAACAAACGAAGAA
GAGAGCAGCGCCTGCGTACGCCAACGCGTTTTGGCTGCGCACGAAAGGCAACTGTCACGACAGAAAAAACTCAATGCAAA
TCTGGGGAATAATGAGATGAAAATCTGGTGCCAGCTTCATCAAGATGACGCAATCTGGCTGGAGCAGACGCTTACGCAAC
TGGGGCTCTCAATCCGGGCCTGGCAGCGCCTGCTTAAAGTTTCACGCACGATTGCCGATATTGAGAAGGTCGATCGTATT
GAACGCCGTCATTTGCAGGAGGCTCTTGGCTATCGGGCAATAGACAGAATGTTGAGCCATCTGCAAAAAATGATGACGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

59.332

100

0.597
  comM Glaesserella parasuis strain SC1401

59.136

100

0.595
  comM Vibrio cholerae strain A1552

59.245

99.407

0.589
  comM Vibrio campbellii strain DS40M4

58.964

99.209

0.585
  comM Legionella pneumophila str. Paris

48.79

98.024

0.478
  comM Legionella pneumophila strain ERS1305867

48.79

98.024

0.478
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.094

100

0.443