Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | V2W30_RS22020 | Genome accession | NZ_CP146022 |
| Coordinates | 4696363..4698894 (+) | Length | 843 a.a. |
| NCBI ID | WP_338698979.1 | Uniprot ID | A0ACD5AET2 |
| Organism | Streptomyces sp. Q6 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 4691363..4703894
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V2W30_RS21990 (V2W30_21990) | - | 4692842..4693438 (+) | 597 | WP_338698969.1 | hypothetical protein | - |
| V2W30_RS21995 (V2W30_21995) | - | 4693452..4693640 (+) | 189 | WP_338698970.1 | hypothetical protein | - |
| V2W30_RS22000 (V2W30_22000) | - | 4693765..4694169 (+) | 405 | WP_338698971.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| V2W30_RS22005 (V2W30_22005) | - | 4694179..4694739 (+) | 561 | WP_338698973.1 | amino-acid N-acetyltransferase | - |
| V2W30_RS22010 (V2W30_22010) | - | 4694992..4695327 (+) | 336 | WP_338698975.1 | Lsr2 family protein | - |
| V2W30_RS22015 (V2W30_22015) | - | 4695306..4695932 (-) | 627 | WP_338698977.1 | SCO3374 family protein | - |
| V2W30_RS22020 (V2W30_22020) | clpC | 4696363..4698894 (+) | 2532 | WP_338698979.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| V2W30_RS22025 (V2W30_22025) | - | 4698994..4701999 (-) | 3006 | WP_338698981.1 | NACHT domain-containing protein | - |
| V2W30_RS22030 (V2W30_22030) | - | 4702479..4703135 (+) | 657 | WP_338698983.1 | M23 family metallopeptidase | - |
| V2W30_RS22035 (V2W30_22035) | - | 4703157..4703738 (-) | 582 | WP_338698985.1 | helix-turn-helix domain-containing protein | - |
Sequence
Protein
Download Length: 843 a.a. Molecular weight: 93161.29 Da Isoelectric Point: 5.8420
>NTDB_id=854580 V2W30_RS22020 WP_338698979.1 4696363..4698894(+) (clpC) [Streptomyces sp. Q6]
MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVRQQVEEIIGQGQQAPSGHIPF
TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKETATAGGPAEGT
PSTSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETLKD
KHLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDELHTLVGAGAAEGAIDAASILKPMLARGELQTIGATT
LDEYRKHLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYISDRFLPDKAIDLID
EAGSRMRIRRMTAPPDLREFDEKIAGVRRDKESAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELI
AEVLATATGIPVFKLTEEESSRLLRMEDELHKRVIGQKDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELSK
ALAEFLFGDEDALISLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHPDIFNSLLQILED
GRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNLGFAATGDTKTNYERMKNKVSDELKQHFRPEFLNRVDDVVVFPQLT
QDDILQIVDLMVGKVDERLKDRDMGLELSQSAKELLSKKGYDPVLGARPLRRTIQREVEDTLSEKILFGELRPGHIVVVD
TEGEGENKTFTFRGEEKSALPDVPPIEDAAAGGSAGPNLSKEA
MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVRQQVEEIIGQGQQAPSGHIPF
TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYQGKETATAGGPAEGT
PSTSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETLKD
KHLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDELHTLVGAGAAEGAIDAASILKPMLARGELQTIGATT
LDEYRKHLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDEALVQAATLADRYISDRFLPDKAIDLID
EAGSRMRIRRMTAPPDLREFDEKIAGVRRDKESAIDSQDFEKAASLRDKEKQLLAAKAKREKEWKAGDMDVVAEVDGELI
AEVLATATGIPVFKLTEEESSRLLRMEDELHKRVIGQKDAVKALSKAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTELSK
ALAEFLFGDEDALISLDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHPDIFNSLLQILED
GRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNLGFAATGDTKTNYERMKNKVSDELKQHFRPEFLNRVDDVVVFPQLT
QDDILQIVDLMVGKVDERLKDRDMGLELSQSAKELLSKKGYDPVLGARPLRRTIQREVEDTLSEKILFGELRPGHIVVVD
TEGEGENKTFTFRGEEKSALPDVPPIEDAAAGGSAGPNLSKEA
Nucleotide
Download Length: 2532 bp
>NTDB_id=854580 V2W30_RS22020 WP_338698979.1 4696363..4698894(+) (clpC) [Streptomyces sp. Q6]
ATGTTCGAGAGGTTCACCGACCGCGCGCGGCGGGTTGTCGTCCTGGCTCAGGAAGAAGCCCGGATGCTCAACCACAACTA
CATCGGCACCGAGCACATCCTCCTGGGCTTGATCCACGAGGGCGAGGGTGTCGCCGCTAAGGCCCTGGAGAGCCTCGGGA
TTTCGCTCGAGGCGGTCCGCCAGCAGGTGGAGGAGATCATCGGCCAGGGGCAGCAGGCCCCGTCCGGTCACATCCCCTTC
ACCCCCCGTGCCAAGAAGGTCCTGGAGCTGTCGCTCCGCGAGGCCCTTCAGCTGGGTCACAACTACATCGGCACGGAGCA
CATCCTGCTCGGCCTGATCCGTGAGGGCGAGGGCGTCGCCGCCCAGGTCCTGGTCAAGCTGGGCGCAGACCTCAACCGCG
TGCGGCAGCAGGTCATCCAGCTGCTCTCCGGTTACCAGGGCAAGGAGACCGCCACCGCCGGCGGTCCTGCGGAGGGCACG
CCCTCCACGTCCCTGGTGCTCGACCAGTTCGGCCGCAACCTGACGCAGGCCGCTCGTGAGTCCAAGCTCGACCCGGTCAT
CGGGCGCGAGAAGGAGATCGAGCGCGTGATGCAGGTCCTGTCGCGCCGTACCAAGAACAACCCGGTCCTGATCGGTGAGC
CCGGCGTCGGCAAGACCGCCGTCGTCGAGGGCCTCGCCCAGGCCATCGTCAAGGGCGAGGTGCCCGAGACCCTCAAGGAC
AAGCACCTCTACACCCTCGACCTGGGTGCGCTGGTCGCCGGTTCCCGCTACCGCGGTGACTTCGAGGAGCGCCTCAAGAA
GGTCCTCAAGGAGATCCGCACCCGCGGCGACATCATCCTGTTCATCGACGAGCTGCACACGCTCGTGGGTGCGGGTGCCG
CCGAGGGCGCCATCGACGCGGCTTCCATCCTGAAGCCGATGCTGGCCCGCGGTGAGCTCCAGACCATCGGTGCCACGACG
CTCGACGAGTACCGCAAGCACCTGGAGAAGGACGCCGCGCTCGAGCGCCGCTTCCAGCCGATCCAGGTCGCGGAGCCGTC
GCTGCCGCACACCATCGAGATCCTCAAGGGCCTGCGGGACCGCTACGAGGCCCACCACCGTGTCTCGATCACGGACGAGG
CCCTCGTGCAGGCGGCCACCCTGGCCGACCGGTACATCTCGGACCGCTTCCTGCCGGACAAGGCGATCGACCTGATCGAC
GAGGCCGGTTCCCGGATGCGCATCCGCCGGATGACCGCGCCGCCGGACCTCCGCGAGTTCGACGAGAAGATCGCGGGCGT
GCGCCGTGACAAGGAGTCGGCCATCGACTCCCAGGACTTCGAGAAGGCAGCTTCGCTCCGCGACAAGGAGAAGCAGCTGC
TGGCGGCGAAGGCCAAGCGCGAGAAGGAGTGGAAGGCCGGCGACATGGACGTCGTCGCCGAGGTCGACGGCGAGCTGATC
GCCGAGGTCCTCGCGACCGCGACCGGCATTCCCGTCTTCAAGCTCACCGAGGAGGAGTCCTCGCGTCTGCTGCGCATGGA
GGACGAGCTCCACAAGCGGGTCATCGGCCAGAAGGACGCCGTCAAGGCGCTCTCGAAGGCGATCCGTCGGACGCGTGCGG
GTCTGAAGGACCCGAAGCGTCCGGGTGGTTCGTTCATCTTCGCGGGCCCGTCCGGTGTCGGTAAGACGGAGCTCAGCAAG
GCTCTCGCCGAGTTCCTCTTCGGTGACGAGGACGCGCTGATCTCCCTCGACATGTCGGAGTTCAGCGAGAAGCACACGGT
CTCGCGTCTCTTCGGTTCGCCCCCCGGTTACGTGGGCTACGAAGAGGGCGGTCAGCTGACCGAGAAGGTGCGCCGCAAGC
CGTTCTCCGTCGTCCTCTTCGACGAGGTGGAGAAGGCCCACCCGGACATCTTCAACAGCCTTCTCCAGATCCTGGAGGAC
GGTCGACTGACCGACTCCCAGGGTCGTGTCGTGGACTTCAAGAACACGGTCATCATCATGACGACCAACCTGGGAACCCG
TGACATCTCGAAGGGCTTCAACCTGGGCTTCGCGGCCACGGGTGACACGAAGACCAACTACGAGCGCATGAAGAACAAGG
TGTCGGACGAGCTCAAGCAGCACTTCCGTCCCGAGTTCCTCAACCGTGTCGACGACGTCGTCGTCTTCCCGCAGCTCACG
CAGGACGACATCCTCCAGATCGTCGACCTGATGGTCGGCAAGGTGGACGAGCGCCTGAAGGACCGGGACATGGGCCTCGA
GCTCTCCCAGTCCGCCAAGGAGCTCCTCTCCAAGAAGGGTTACGACCCGGTTCTGGGCGCGCGGCCGCTGCGTCGCACGA
TCCAGCGCGAGGTCGAGGACACCCTCTCGGAGAAGATCCTCTTCGGCGAGCTGCGTCCGGGCCACATCGTGGTCGTGGAC
ACGGAGGGCGAGGGCGAGAACAAGACCTTCACCTTCCGCGGCGAGGAGAAGTCGGCACTGCCCGACGTCCCCCCGATCGA
GGACGCGGCCGCGGGCGGTTCCGCCGGGCCGAATCTGAGCAAGGAGGCGTAA
ATGTTCGAGAGGTTCACCGACCGCGCGCGGCGGGTTGTCGTCCTGGCTCAGGAAGAAGCCCGGATGCTCAACCACAACTA
CATCGGCACCGAGCACATCCTCCTGGGCTTGATCCACGAGGGCGAGGGTGTCGCCGCTAAGGCCCTGGAGAGCCTCGGGA
TTTCGCTCGAGGCGGTCCGCCAGCAGGTGGAGGAGATCATCGGCCAGGGGCAGCAGGCCCCGTCCGGTCACATCCCCTTC
ACCCCCCGTGCCAAGAAGGTCCTGGAGCTGTCGCTCCGCGAGGCCCTTCAGCTGGGTCACAACTACATCGGCACGGAGCA
CATCCTGCTCGGCCTGATCCGTGAGGGCGAGGGCGTCGCCGCCCAGGTCCTGGTCAAGCTGGGCGCAGACCTCAACCGCG
TGCGGCAGCAGGTCATCCAGCTGCTCTCCGGTTACCAGGGCAAGGAGACCGCCACCGCCGGCGGTCCTGCGGAGGGCACG
CCCTCCACGTCCCTGGTGCTCGACCAGTTCGGCCGCAACCTGACGCAGGCCGCTCGTGAGTCCAAGCTCGACCCGGTCAT
CGGGCGCGAGAAGGAGATCGAGCGCGTGATGCAGGTCCTGTCGCGCCGTACCAAGAACAACCCGGTCCTGATCGGTGAGC
CCGGCGTCGGCAAGACCGCCGTCGTCGAGGGCCTCGCCCAGGCCATCGTCAAGGGCGAGGTGCCCGAGACCCTCAAGGAC
AAGCACCTCTACACCCTCGACCTGGGTGCGCTGGTCGCCGGTTCCCGCTACCGCGGTGACTTCGAGGAGCGCCTCAAGAA
GGTCCTCAAGGAGATCCGCACCCGCGGCGACATCATCCTGTTCATCGACGAGCTGCACACGCTCGTGGGTGCGGGTGCCG
CCGAGGGCGCCATCGACGCGGCTTCCATCCTGAAGCCGATGCTGGCCCGCGGTGAGCTCCAGACCATCGGTGCCACGACG
CTCGACGAGTACCGCAAGCACCTGGAGAAGGACGCCGCGCTCGAGCGCCGCTTCCAGCCGATCCAGGTCGCGGAGCCGTC
GCTGCCGCACACCATCGAGATCCTCAAGGGCCTGCGGGACCGCTACGAGGCCCACCACCGTGTCTCGATCACGGACGAGG
CCCTCGTGCAGGCGGCCACCCTGGCCGACCGGTACATCTCGGACCGCTTCCTGCCGGACAAGGCGATCGACCTGATCGAC
GAGGCCGGTTCCCGGATGCGCATCCGCCGGATGACCGCGCCGCCGGACCTCCGCGAGTTCGACGAGAAGATCGCGGGCGT
GCGCCGTGACAAGGAGTCGGCCATCGACTCCCAGGACTTCGAGAAGGCAGCTTCGCTCCGCGACAAGGAGAAGCAGCTGC
TGGCGGCGAAGGCCAAGCGCGAGAAGGAGTGGAAGGCCGGCGACATGGACGTCGTCGCCGAGGTCGACGGCGAGCTGATC
GCCGAGGTCCTCGCGACCGCGACCGGCATTCCCGTCTTCAAGCTCACCGAGGAGGAGTCCTCGCGTCTGCTGCGCATGGA
GGACGAGCTCCACAAGCGGGTCATCGGCCAGAAGGACGCCGTCAAGGCGCTCTCGAAGGCGATCCGTCGGACGCGTGCGG
GTCTGAAGGACCCGAAGCGTCCGGGTGGTTCGTTCATCTTCGCGGGCCCGTCCGGTGTCGGTAAGACGGAGCTCAGCAAG
GCTCTCGCCGAGTTCCTCTTCGGTGACGAGGACGCGCTGATCTCCCTCGACATGTCGGAGTTCAGCGAGAAGCACACGGT
CTCGCGTCTCTTCGGTTCGCCCCCCGGTTACGTGGGCTACGAAGAGGGCGGTCAGCTGACCGAGAAGGTGCGCCGCAAGC
CGTTCTCCGTCGTCCTCTTCGACGAGGTGGAGAAGGCCCACCCGGACATCTTCAACAGCCTTCTCCAGATCCTGGAGGAC
GGTCGACTGACCGACTCCCAGGGTCGTGTCGTGGACTTCAAGAACACGGTCATCATCATGACGACCAACCTGGGAACCCG
TGACATCTCGAAGGGCTTCAACCTGGGCTTCGCGGCCACGGGTGACACGAAGACCAACTACGAGCGCATGAAGAACAAGG
TGTCGGACGAGCTCAAGCAGCACTTCCGTCCCGAGTTCCTCAACCGTGTCGACGACGTCGTCGTCTTCCCGCAGCTCACG
CAGGACGACATCCTCCAGATCGTCGACCTGATGGTCGGCAAGGTGGACGAGCGCCTGAAGGACCGGGACATGGGCCTCGA
GCTCTCCCAGTCCGCCAAGGAGCTCCTCTCCAAGAAGGGTTACGACCCGGTTCTGGGCGCGCGGCCGCTGCGTCGCACGA
TCCAGCGCGAGGTCGAGGACACCCTCTCGGAGAAGATCCTCTTCGGCGAGCTGCGTCCGGGCCACATCGTGGTCGTGGAC
ACGGAGGGCGAGGGCGAGAACAAGACCTTCACCTTCCGCGGCGAGGAGAAGTCGGCACTGCCCGACGTCCCCCCGATCGA
GGACGCGGCCGCGGGCGGTTCCGCCGGGCCGAATCTGAGCAAGGAGGCGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
61.471 |
95.136 |
0.585 |
| clpC | Streptococcus mutans UA159 |
44.578 |
98.458 |
0.439 |
| clpC | Streptococcus thermophilus LMD-9 |
43.333 |
99.644 |
0.432 |
| clpC | Streptococcus thermophilus LMG 18311 |
43.163 |
99.763 |
0.431 |
| clpC | Streptococcus pneumoniae Rx1 |
44.707 |
95.255 |
0.426 |
| clpC | Streptococcus pneumoniae D39 |
44.707 |
95.255 |
0.426 |
| clpC | Streptococcus pneumoniae TIGR4 |
44.737 |
94.662 |
0.423 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
44.074 |
96.085 |
0.423 |
| clpE | Streptococcus mutans UA159 |
54.473 |
74.259 |
0.405 |
| clpE | Streptococcus pneumoniae TIGR4 |
53.291 |
73.903 |
0.394 |
| clpE | Streptococcus pneumoniae R6 |
53.13 |
73.903 |
0.393 |
| clpE | Streptococcus pneumoniae D39 |
53.13 |
73.903 |
0.393 |
| clpE | Streptococcus pneumoniae Rx1 |
53.13 |
73.903 |
0.393 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
52.903 |
73.547 |
0.389 |