Detailed information NTG0854576

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: V2W30_RS21055
• Genome accession: NZ_CP146022
• Coordinates: 4500236..4502839 (+)
• Length: 867 a.a.
• NCBI ID: WP_338698682.1
• Uniprot ID: A0ACD5AED6
• Organism: Streptomyces sp. Q6
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 4495236..4507839

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V2W30_RS21025 (V2W30_21025)	-	4495688..4496812 (+)	1125	WP_338698673.1	substrate-binding domain-containing protein	-
V2W30_RS21030 (V2W30_21030)	-	4496880..4497854 (-)	975	WP_338703711.1	LuxR C-terminal-related transcriptional regulator	-
V2W30_RS21035 (V2W30_21035)	-	4497854..4498879 (-)	1026	WP_338698674.1	helix-turn-helix transcriptional regulator	-
V2W30_RS21040 (V2W30_21040)	-	4499010..4499201 (+)	192	WP_338698676.1	hypothetical protein	-
V2W30_RS21045 (V2W30_21045)	-	4499198..4499551 (+)	354	WP_338698678.1	hypothetical protein	-
V2W30_RS21050 (V2W30_21050)	-	4499660..4500082 (-)	423	WP_338698680.1	TIGR03618 family F420-dependent PPOX class oxidoreductase	-
V2W30_RS21055 (V2W30_21055)	clpC	4500236..4502839 (+)	2604	WP_338698682.1	ATP-dependent chaperone ClpB	Regulator
V2W30_RS21060 (V2W30_21060)	-	4503060..4503602 (+)	543	WP_338698684.1	YbjN domain-containing protein	-
V2W30_RS21065 (V2W30_21065)	-	4503612..4504739 (-)	1128	WP_338703713.1	hypothetical protein	-
V2W30_RS21070 (V2W30_21070)	-	4504912..4506111 (-)	1200	WP_338698686.1	pyridoxal phosphate-dependent aminotransferase	-
V2W30_RS21075 (V2W30_21075)	-	4506247..4506564 (+)	318	WP_338698687.1	hypothetical protein	-
V2W30_RS21080 (V2W30_21080)	-	4506927..4507454 (+)	528	WP_338698688.1	DUF2617 family protein	-

Sequence

Protein

• Length: 867 a.a.
• Molecular weight: 94488.92 Da
• Isoelectric Point: 4.7129

>NTDB_id=854576 V2W30_RS21055 WP_338698682.1 4500236..4502839(+) (clpC) [Streptomyces sp. Q6]
MDAELTNRSRDAINAASSRAVSGGHPDLTPAHLLLALLEGRAEETANITDLLAAVDADQVRVREGAERVLAGLPSVTGST
VAPPQPSRDLLAVIADAGERAKELGDEFLSTEHLLIAIAAKGGAAGEVLNENGASAKKLAEAFAKIRGGRRVTTPDPEGS
YKALEKFGTDFTAAAREGRLDPVIGRDQEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPESLKNKRL
VSLDLGAMVAGAKYRGEFEERLKTVLSEIKESDGQIITFIDELHTVVGAGAGGDSAMDAGNMLKPMLARGELRMVGATTL
DEYRERIEKDPALERRFQQVLVAEPSVEDSIAILRGLKGRYEAHHKVQIADSALVAAATLSDRYITSRFLPDKAIDLVDE
SASRLRMEIDSSPVEIDELQRAVDRLKMEELAIGKETDPASKQRLEKLRRDLADKEEELRGLTARWEKEKQSLNRVGELK
EKLDELRGQAERAQRDGDFDTASKLLYGEIPSLERDLEEASEAEEEVARDTMVKEEVGPDDIADVVASWTGIPAGRLLEG
ETQKLLRMEEELGKRLIGQSEAVQAVSDAVRRTRAGIADPDRPTGSFLFLGPTGVGKTELAKALADFLFDDERAMIRIDM
SEYGEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEVEKAHPEVFDVLLQVLDDGRLTDGQGRTVDFRNTIL
VLTSNLGSQYLVDPLTSAEEKKQQVLDVVRASFKPEFLNRLDDLVVFSALEKDELRRIASLQIGRLAKRLAERRLTLDVS
DAALDWLATEGNDPAYGARPLRRLVQTAIGDRLAKEILSGEVVDGDTVKVDTFGDGLIVGAATGKTL

Nucleotide

• Length: 2604 bp

>NTDB_id=854576 V2W30_RS21055 WP_338698682.1 4500236..4502839(+) (clpC) [Streptomyces sp. Q6]
GTGGACGCCGAGCTGACGAACCGGAGCCGCGACGCGATCAACGCGGCAAGCAGCCGGGCCGTGTCCGGGGGCCACCCGGA
TCTGACCCCGGCCCATCTGCTGCTCGCCCTGTTGGAGGGGCGGGCCGAGGAGACCGCGAACATCACCGACCTGCTGGCCG
CGGTCGACGCCGATCAGGTACGGGTGCGGGAGGGCGCCGAGCGCGTGCTCGCGGGCCTGCCCAGTGTCACCGGGTCGACC
GTCGCACCGCCGCAGCCGAGCCGCGACCTGCTGGCGGTCATCGCCGACGCCGGTGAGCGCGCGAAGGAACTGGGCGACGA
GTTCCTCTCCACGGAGCACCTGCTGATCGCCATTGCCGCCAAGGGCGGGGCCGCCGGTGAGGTACTGAACGAGAATGGGG
CCAGTGCGAAGAAGCTGGCCGAGGCCTTCGCGAAGATCAGGGGAGGGCGCCGGGTGACGACACCCGACCCCGAGGGGTCG
TACAAGGCACTGGAGAAGTTCGGGACCGACTTCACCGCCGCCGCGCGCGAGGGACGGCTCGATCCCGTCATCGGGCGGGA
CCAGGAGATCCGGCGCGTGGTGCAGGTGCTGTCCCGGCGGACCAAGAACAACCCCGTGCTCATCGGCGAGCCCGGCGTCG
GCAAGACCGCCGTCGTCGAGGGTCTCGCGCAGCGCATCGTGAAGGGGGACGTGCCGGAGAGCCTCAAGAACAAGCGGCTC
GTCTCGCTCGACCTCGGTGCGATGGTCGCGGGCGCGAAGTACCGCGGCGAGTTCGAGGAGCGCCTGAAGACCGTCCTCTC
CGAGATCAAGGAGAGCGACGGGCAGATCATCACGTTCATCGACGAGCTGCACACCGTCGTCGGCGCGGGCGCCGGCGGGG
ACTCCGCCATGGACGCGGGGAACATGCTGAAGCCCATGCTCGCGCGCGGTGAGCTGCGCATGGTGGGCGCGACGACGCTC
GACGAGTACCGCGAGCGGATCGAGAAGGACCCGGCGCTGGAGCGGCGGTTCCAGCAGGTGCTGGTCGCCGAGCCGTCCGT
CGAGGACTCGATCGCGATCCTGCGCGGGCTCAAGGGACGCTACGAGGCCCACCACAAGGTCCAGATCGCCGACAGCGCGC
TGGTCGCCGCGGCCACGCTGTCCGACCGGTACATCACCTCCCGCTTCCTTCCCGACAAGGCCATCGACCTCGTCGACGAG
TCCGCGTCGCGGCTGCGGATGGAGATCGACTCCTCGCCCGTCGAGATCGACGAACTCCAGCGCGCCGTCGACCGGTTGAA
GATGGAGGAGCTGGCGATCGGCAAGGAGACCGACCCCGCCAGCAAGCAGCGCCTGGAGAAGCTGCGGCGCGATCTCGCCG
ACAAGGAGGAGGAGCTGCGCGGACTCACCGCCCGCTGGGAGAAGGAGAAGCAGTCCCTCAACCGCGTCGGTGAGCTGAAG
GAGAAGCTCGACGAGCTGCGCGGGCAGGCCGAGCGCGCCCAGCGCGACGGCGACTTCGACACCGCGAGCAAGCTCCTCTA
CGGCGAGATCCCGTCCCTGGAAAGGGACTTGGAGGAGGCCAGCGAGGCCGAGGAGGAGGTCGCGCGCGACACCATGGTCA
AGGAGGAGGTCGGGCCCGACGACATCGCCGACGTCGTCGCGTCCTGGACCGGCATCCCCGCCGGACGCCTCCTGGAGGGC
GAGACGCAGAAGCTGCTCCGGATGGAGGAGGAGCTGGGCAAGCGGCTCATCGGGCAGAGCGAGGCCGTCCAGGCCGTCTC
CGACGCCGTACGCCGTACGCGCGCCGGTATCGCCGACCCGGACCGGCCCACCGGTTCGTTCCTCTTCCTCGGTCCGACGG
GTGTCGGCAAGACCGAACTCGCCAAGGCGCTCGCCGACTTCCTCTTCGACGACGAGCGGGCCATGATCCGCATCGACATG
AGCGAGTACGGCGAGAAGCACAGCGTCGCGCGGCTCGTCGGTGCGCCGCCCGGCTACGTCGGGTACGAGGAGGGCGGCCA
GCTCACGGAGGCGGTGCGCCGTCGCCCGTACAGCGTGGTGCTGCTCGACGAGGTCGAGAAGGCGCACCCGGAGGTCTTCG
ACGTCCTGCTCCAGGTGCTCGACGACGGACGGCTGACCGACGGCCAGGGTCGCACGGTCGACTTCCGCAACACGATCCTG
GTCCTCACGTCGAACCTCGGCTCGCAGTACCTGGTCGATCCGCTGACCTCGGCGGAGGAGAAGAAGCAGCAGGTCCTGGA
CGTCGTACGGGCGTCCTTCAAGCCCGAGTTCCTGAACCGGCTCGACGACCTCGTGGTCTTCTCGGCGCTGGAGAAGGACG
AACTGCGCCGGATCGCCTCGCTCCAGATCGGGCGCCTCGCGAAGCGGCTCGCCGAGCGCCGGCTGACCCTCGACGTCAGC
GACGCGGCGCTGGACTGGCTGGCGACCGAGGGCAACGACCCGGCGTACGGGGCGCGGCCGCTGCGCCGGCTCGTCCAGAC
GGCGATCGGCGACCGGCTCGCCAAGGAGATCCTGTCCGGCGAGGTCGTGGACGGGGACACGGTCAAGGTCGACACCTTCG
GCGACGGGCTGATCGTGGGCGCGGCCACGGGCAAGACGCTGTAA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (206-340)

• AAA domain (Cdc48 subfamily) (AAA_2) (602-763)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (18-39)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-148)

• AAA lid domain (AAA_lid_9) (346-448)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (770-850)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	44.131	100	0.451
clpC	Lactococcus lactis subsp. cremoris KW2	46.884	81.43	0.382
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	45.317	83.737	0.379