Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   V2W30_RS12840 Genome accession   NZ_CP146022
Coordinates   2747743..2749671 (+) Length   642 a.a.
NCBI ID   WP_338696241.1    Uniprot ID   A0ACD5AAJ1
Organism   Streptomyces sp. Q6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2742743..2754671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2W30_RS12825 (V2W30_12825) - 2744034..2744336 (+) 303 WP_338696237.1 YtxH domain-containing protein -
  V2W30_RS12830 (V2W30_12830) - 2744376..2745806 (+) 1431 WP_338696238.1 FGGY family carbohydrate kinase -
  V2W30_RS12835 (V2W30_12835) rcrP 2746004..2747743 (+) 1740 WP_338696239.1 ABC transporter ATP-binding protein Regulator
  V2W30_RS12840 (V2W30_12840) rcrQ 2747743..2749671 (+) 1929 WP_338696241.1 ABC transporter ATP-binding protein Regulator
  V2W30_RS12845 (V2W30_12845) - 2749753..2751039 (-) 1287 WP_338696243.1 RNA polymerase sigma factor -
  V2W30_RS12850 (V2W30_12850) dnaG 2751207..2753102 (-) 1896 WP_338696245.1 DNA primase -
  V2W30_RS12855 (V2W30_12855) - 2753137..2754402 (-) 1266 WP_338696247.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 68457.65 Da        Isoelectric Point: 5.1675

>NTDB_id=854565 V2W30_RS12840 WP_338696241.1 2747743..2749671(+) (rcrQ) [Streptomyces sp. Q6]
MSGPMAARMAAGGPNARSMDFKGSGKRLLKRLAAHRASVVGVLVAVVISVGLSVVGPKILGHATDLLFGGIVGGQLPAGQ
TKEQVIEGLRAKGDGGMADMLGGVDFTPGQGVDFGAIGEVLLLALAVFAVAGVSMMIGTRLANRAINLAVAKLRGDMQAK
LSRLPLSYYDKQKRGEVLSRATNDIDNIGQTLQQTMGQMLNSLLTIVGVLVMMFWISWLLALVALVTVPLSVLVAAKVGK
RSQPQFVQQWKTTGVLNAHVEEMYTGHNLVKVFGRQQESAEQFAEQNEALYEASFKAQFNSGIMQPLMFFISNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQSADPVPGAKPQNLRGHVEFE
HVAFRYDEDKPLIEDLSLTAEPGHTVAIVGPTGAGKTTLVNLLLRFYDVTGGRITLDGVDIATMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGAAKDVSPEEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMARLAAGRTSFVIAHRLSTIRDADTILVMENGAIVEQGSHDALVASGGAYQRLYEAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=854565 V2W30_RS12840 WP_338696241.1 2747743..2749671(+) (rcrQ) [Streptomyces sp. Q6]
ATGAGTGGGCCGATGGCGGCGCGGATGGCGGCCGGTGGGCCCAACGCGCGCTCGATGGACTTCAAGGGGTCGGGCAAGCG
GCTCCTGAAGCGGCTCGCGGCGCATCGCGCGTCGGTGGTCGGGGTGCTGGTCGCGGTGGTGATCAGTGTGGGCCTTTCGG
TGGTCGGGCCGAAGATCCTGGGGCACGCCACCGACCTGCTGTTCGGCGGGATCGTCGGCGGGCAGCTGCCGGCCGGGCAG
ACCAAGGAGCAGGTCATCGAGGGCCTGCGGGCCAAGGGTGACGGCGGCATGGCCGACATGCTCGGCGGCGTCGACTTCAC
GCCCGGCCAGGGCGTGGACTTCGGGGCGATCGGCGAGGTGCTGCTGCTCGCGCTCGCGGTGTTCGCGGTGGCGGGCGTGT
CCATGATGATCGGCACGCGGCTGGCCAACCGGGCGATCAACCTGGCCGTGGCGAAGCTCCGCGGCGACATGCAGGCGAAG
CTGTCGCGGCTTCCGCTGTCGTACTACGACAAGCAGAAGCGCGGCGAGGTGCTGAGCCGGGCGACGAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGACGATGGGGCAGATGCTCAACTCGCTGCTGACCATCGTCGGCGTCCTCGTGATGATGT
TCTGGATCTCGTGGCTGCTCGCGCTGGTCGCGCTGGTGACGGTGCCGCTGTCGGTGCTCGTCGCGGCGAAGGTCGGCAAG
CGGTCGCAGCCGCAGTTCGTGCAGCAGTGGAAGACCACGGGTGTGCTGAACGCGCACGTCGAGGAGATGTACACGGGCCA
CAACCTGGTGAAGGTGTTCGGGCGGCAGCAGGAGTCGGCCGAGCAGTTCGCCGAGCAGAACGAAGCGCTGTACGAGGCCT
CGTTCAAGGCGCAGTTCAACAGCGGCATCATGCAGCCGCTGATGTTCTTCATCTCGAACCTGAACTATGTGCTGGTCGCC
GTGGTCGGCGGGTTGAGGGTGGCCAGCGGGTCGCTCTCCATCGGCGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTGGCGTCGATGGCGAACCTGGTGCAGTCGGGTGTCGCGTCCGCCGAGCGGATCTTCGAAC
TCCTCGACGCGGAGGAGCAGTCGGCGGATCCGGTGCCGGGTGCGAAGCCGCAGAACCTGCGCGGGCACGTCGAGTTCGAG
CACGTCGCCTTCCGCTACGACGAGGACAAGCCGCTCATCGAGGACCTCTCGCTGACGGCGGAGCCGGGGCACACGGTCGC
GATCGTCGGGCCGACGGGCGCGGGCAAGACCACGCTCGTCAATCTGCTGCTGCGGTTCTACGACGTCACCGGGGGGCGCA
TCACGCTCGACGGGGTCGACATCGCGACGATGTCGCGCGACGAACTGCGGGCCGGTATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGCGCCGCGAAGGACGTCTCGCCGGAGGAGATCGAGGAGGC
GGCGCGGGCCGCGCACGCCGACCGGTTCATCCGGACGCTGCCCGACGGGTACGACACCGTGATCGACGACGAGGGCACGG
GCGTCAGCGCGGGTGAGAAGCAGCTCATCACCATCGCGCGGGCCTTCCTGTCCGACCCCGTGATACTGGTCCTCGACGAG
GCGACCAGCTCGGTGGACACCCGGACCGAGGTGCTCATCCAGAAGGCCATGGCGCGGCTCGCCGCCGGTCGTACGTCGTT
CGTCATCGCGCACCGTCTGTCGACGATCCGCGATGCCGACACGATTCTGGTCATGGAGAACGGGGCGATCGTGGAGCAGG
GCTCGCACGACGCGCTGGTCGCCTCCGGCGGGGCTTATCAGCGGTTGTACGAGGCCCAGTTCGCTCAGGCGGTCGCCGAG
GTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(42-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.931

97.04

0.397