Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   V2W30_RS12835 Genome accession   NZ_CP146022
Coordinates   2746004..2747743 (+) Length   579 a.a.
NCBI ID   WP_338696239.1    Uniprot ID   A0ACD5AE46
Organism   Streptomyces sp. Q6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2741004..2752743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2W30_RS12800 (V2W30_12800) - 2741559..2742515 (+) 957 WP_338694943.1 IS481 family transposase -
  V2W30_RS12805 (V2W30_12805) - 2742553..2743401 (+) 849 WP_338696235.1 aminoglycoside phosphotransferase family protein -
  V2W30_RS12825 (V2W30_12825) - 2744034..2744336 (+) 303 WP_338696237.1 YtxH domain-containing protein -
  V2W30_RS12830 (V2W30_12830) - 2744376..2745806 (+) 1431 WP_338696238.1 FGGY family carbohydrate kinase -
  V2W30_RS12835 (V2W30_12835) rcrP 2746004..2747743 (+) 1740 WP_338696239.1 ABC transporter ATP-binding protein Regulator
  V2W30_RS12840 (V2W30_12840) rcrQ 2747743..2749671 (+) 1929 WP_338696241.1 ABC transporter ATP-binding protein Regulator
  V2W30_RS12845 (V2W30_12845) - 2749753..2751039 (-) 1287 WP_338696243.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 62856.01 Da        Isoelectric Point: 5.5556

>NTDB_id=854564 V2W30_RS12835 WP_338696239.1 2746004..2747743(+) (rcrP) [Streptomyces sp. Q6]
MLIQLLRTYLGPYKKPIGLLVLLQFLQTCAALYLPTLNADIIDNGVVNGDTGYILTFGALMLGVTVVQVVCNTGAVYFGA
RTAAALGRDMRGGIFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLVLMGFTLMVSAPIMCVGGVVMALGLDVPLSGV
LLAVLPVMAIVLSLIIRRMRPLFRSMQVKLDTVNRVLREQITGNRVIRAFVRDDFEKDRFGRANWDLTETSLATGRIMAL
MFPFVMTIVNVASIAVVWFGAHRINSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMQVPRAEVCAERIQEVLATESSVVP
PAPENSVRELRRRGHLEIRGADFGYPGAEEPVLRGVDLIALPGETTAVIGSTGSGKSTLLGLVPRLYDTTAGVVYVDGED
VREIDPVLMAKTVGLVPQKPYLFSGTVGSNLRYGHPDATDEELWHALEVAQAKDFVSRLEGGLDAPITQGGTNVSGGQRQ
RLAIARTLVQRPEIYLFDDSFSALDYATDAALRRALGAETADSTVVIVAQRVATIRDADRIIVLDEGRVVGTGRHHELMA
GNETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=854564 V2W30_RS12835 WP_338696239.1 2746004..2747743(+) (rcrP) [Streptomyces sp. Q6]
GTGCTCATACAACTCCTGCGGACCTATCTCGGGCCGTACAAGAAACCCATCGGGCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGTGCCGCGCTGTACCTGCCCACGCTGAACGCGGACATCATCGACAACGGTGTCGTCAACGGCGACACCGGCTACA
TCCTGACCTTCGGCGCCCTGATGCTGGGCGTCACCGTCGTGCAGGTCGTCTGCAACACCGGCGCCGTCTACTTCGGCGCG
CGCACCGCCGCCGCTCTCGGGCGGGACATGCGGGGCGGGATCTTCGACCGGGTGCAGTCGTTCTCGGCGCGTGAGGTCGG
CCAGTTCGGGGCGCCCTCGCTGATCACCCGGACCACGAACGACGTGCAGCAGGTCCAGATGCTGGTGCTCATGGGCTTCA
CGCTCATGGTGTCGGCGCCGATCATGTGCGTCGGCGGTGTGGTCATGGCCCTGGGGCTCGACGTGCCGCTGTCCGGTGTG
CTGCTCGCCGTGCTGCCGGTGATGGCGATCGTGCTGTCGCTGATCATCCGCAGGATGCGACCGCTGTTCCGGTCCATGCA
GGTCAAGCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTGCGCGACG
ACTTCGAGAAGGACCGGTTCGGCCGGGCCAACTGGGATCTGACGGAGACGTCGCTGGCCACCGGCCGGATCATGGCGCTG
ATGTTCCCGTTCGTCATGACGATCGTGAACGTCGCCTCGATCGCCGTCGTCTGGTTCGGCGCGCACCGGATCAACAGCGG
CGGCATGCAGATCGGTGACCTGACCGCGTTCCTCGCGTATCTGATGCAGATCGTGATGAGCGTGATGATGGCCACCTTCA
TGTTCATGCAGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTCGCGACCGAGTCGAGCGTCGTGCCG
CCGGCCCCCGAGAACTCCGTACGGGAACTGCGGCGGCGCGGGCACCTGGAGATCCGGGGCGCCGACTTCGGCTACCCGGG
CGCCGAGGAGCCCGTGCTGCGCGGGGTCGACCTGATCGCGCTGCCCGGCGAGACCACCGCGGTCATCGGCTCGACCGGCA
GCGGCAAGTCGACGCTGCTCGGGCTCGTGCCGCGGCTGTACGACACCACCGCGGGCGTCGTGTACGTCGACGGCGAGGAC
GTCCGCGAGATCGATCCGGTCCTGATGGCGAAGACCGTCGGACTCGTCCCGCAGAAGCCGTACCTGTTCTCCGGGACCGT
CGGCTCGAACCTGCGGTACGGGCATCCCGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGG
ACTTCGTCTCCCGCCTCGAAGGCGGGCTGGACGCGCCGATCACGCAGGGCGGGACGAACGTCTCGGGTGGTCAGCGGCAG
CGGCTCGCGATCGCGCGCACGCTCGTGCAGCGGCCCGAGATCTATCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGC
CACCGACGCGGCGCTGCGCCGTGCGCTGGGGGCGGAGACGGCCGACTCGACCGTGGTGATCGTGGCCCAGCGGGTCGCGA
CGATCCGCGACGCGGACCGGATCATCGTGCTCGACGAGGGCCGGGTGGTCGGCACCGGGCGCCACCACGAGCTGATGGCC
GGGAACGAGACGTACCGGGAGATCGTCCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(354-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.208

97.237

0.401