Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QRA03_RS22180 Genome accession   NZ_CP129604
Coordinates   4220027..4220314 (+) Length   95 a.a.
NCBI ID   WP_000648330.1    Uniprot ID   A0AAE9P9A9
Organism   Bacillus paranthracis strain PUMB_17     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4215027..4225314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA03_RS22160 (QRA03_22190) - 4216201..4216398 (+) 198 WP_001008785.1 DUF4083 domain-containing protein -
  QRA03_RS22165 (QRA03_22195) - 4216430..4216891 (+) 462 WP_000024998.1 NUDIX hydrolase -
  QRA03_RS22170 (QRA03_22200) nadE 4216940..4217758 (-) 819 WP_000174881.1 ammonia-dependent NAD(+) synthetase -
  QRA03_RS22175 (QRA03_22205) - 4218030..4219910 (+) 1881 WP_001026019.1 ABC transporter permease -
  QRA03_RS22180 (QRA03_22210) abrB 4220027..4220314 (+) 288 WP_000648330.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QRA03_RS22185 (QRA03_22215) - 4220589..4221539 (+) 951 WP_001089039.1 serine protease -
  QRA03_RS22190 (QRA03_22220) ugpC 4221752..4222855 (-) 1104 WP_000829433.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  QRA03_RS22195 (QRA03_22225) - 4223122..4223985 (-) 864 WP_000615941.1 helix-turn-helix domain-containing protein -
  QRA03_RS22200 (QRA03_22230) - 4224054..4224914 (-) 861 WP_000064377.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10617.34 Da        Isoelectric Point: 6.3179

>NTDB_id=854541 QRA03_RS22180 WP_000648330.1 4220027..4220314(+) (abrB) [Bacillus paranthracis strain PUMB_17]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=854541 QRA03_RS22180 WP_000648330.1 4220027..4220314(+) (abrB) [Bacillus paranthracis strain PUMB_17]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTAATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATTAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGCTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516