Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QRA03_RS20350 Genome accession   NZ_CP129604
Coordinates   3849626..3850228 (-) Length   200 a.a.
NCBI ID   WP_000155592.1    Uniprot ID   A0A0G8BSW4
Organism   Bacillus paranthracis strain PUMB_17     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3844626..3855228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA03_RS20330 (QRA03_20350) dnaD 3844942..3845649 (+) 708 WP_000728540.1 DNA replication protein DnaD -
  QRA03_RS20335 (QRA03_20355) nth 3845665..3846312 (+) 648 WP_000933025.1 endonuclease III -
  QRA03_RS20340 (QRA03_20360) - 3846316..3846834 (+) 519 WP_000442680.1 YpoC family protein -
  QRA03_RS20345 (QRA03_20365) - 3846858..3849560 (-) 2703 WP_001283127.1 PBP1A family penicillin-binding protein -
  QRA03_RS20350 (QRA03_20370) recU 3849626..3850228 (-) 603 WP_000155592.1 Holliday junction resolvase RecU Machinery gene
  QRA03_RS20355 (QRA03_20375) - 3850332..3851357 (+) 1026 WP_002027377.1 DUF2515 domain-containing protein -
  QRA03_RS20360 (QRA03_20380) - 3851481..3851657 (-) 177 WP_001982922.1 hypothetical protein -
  QRA03_RS20365 (QRA03_20385) - 3851743..3851985 (+) 243 WP_001252039.1 hypothetical protein -
  QRA03_RS20370 (QRA03_20390) - 3852001..3852345 (+) 345 WP_000872959.1 YppE family protein -
  QRA03_RS20375 (QRA03_20395) - 3852371..3852562 (-) 192 WP_000242664.1 YppF family protein -
  QRA03_RS20380 (QRA03_20400) - 3852740..3853210 (+) 471 WP_000487707.1 YppG family protein -
  QRA03_RS20385 (QRA03_20405) - 3853366..3853788 (+) 423 WP_000546264.1 CotD family spore coat protein -
  QRA03_RS20390 (QRA03_20410) - 3853845..3854399 (+) 555 WP_000862921.1 DUF1273 domain-containing protein -
  QRA03_RS20395 (QRA03_20415) gpsB 3854497..3854835 (+) 339 WP_000622430.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23342.61 Da        Isoelectric Point: 9.4277

>NTDB_id=854540 QRA03_RS20350 WP_000155592.1 3849626..3850228(-) (recU) [Bacillus paranthracis strain PUMB_17]
MTIRYPNGKRYNQASQPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=854540 QRA03_RS20350 WP_000155592.1 3849626..3850228(-) (recU) [Bacillus paranthracis strain PUMB_17]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACAACCTCATAAAACACCAATTAAAAAACATACTTA
TAGTAACAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACGAATGAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACGAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAGCATATGAAGCAAGTAATCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACAGGTGGAAGAAAATCGATTACGAAAGAAGAAATAGAAGAGCATGGATCTTTATTATCATGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0G8BSW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63

100

0.63