Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QRA03_RS19015 Genome accession   NZ_CP129604
Coordinates   3607016..3607339 (-) Length   107 a.a.
NCBI ID   WP_000578886.1    Uniprot ID   -
Organism   Bacillus paranthracis strain PUMB_17     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3602016..3612339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA03_RS18990 (QRA03_19010) - 3602253..3603539 (+) 1287 WP_000247020.1 D-alanyl-D-alanine carboxypeptidase family protein -
  QRA03_RS18995 (QRA03_19015) - 3603734..3604303 (+) 570 WP_000767807.1 signal peptidase I -
  QRA03_RS19000 (QRA03_19020) - 3604364..3604954 (+) 591 WP_000172846.1 TasA family protein -
  QRA03_RS19005 (QRA03_19025) - 3605112..3605921 (+) 810 WP_048538903.1 DUF4047 domain-containing protein -
  QRA03_RS19010 (QRA03_19030) calY 3606348..3606941 (+) 594 WP_000053739.1 biofilm matrix protein CalY -
  QRA03_RS19015 (QRA03_19035) sinR 3607016..3607339 (-) 324 WP_000578886.1 helix-turn-helix domain-containing protein Regulator
  QRA03_RS19020 (QRA03_19040) - 3607419..3607553 (-) 135 WP_000276223.1 anti-repressor SinI family protein -
  QRA03_RS19025 (QRA03_19045) inhA1 3607895..3610282 (+) 2388 WP_001035931.1 M6 family metalloprotease immune inhibitor InhA1 -
  QRA03_RS19030 (QRA03_19050) - 3610454..3611821 (+) 1368 WP_000116810.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12362.21 Da        Isoelectric Point: 7.2052

>NTDB_id=854538 QRA03_RS19015 WP_000578886.1 3607016..3607339(-) (sinR) [Bacillus paranthracis strain PUMB_17]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTMENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=854538 QRA03_RS19015 WP_000578886.1 3607016..3607339(-) (sinR) [Bacillus paranthracis strain PUMB_17]
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAATTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAATGGAAAATCACTTAGACTCTGAATGGACACAACTCGTT
AAAGATGCAATGAGCTCAGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692