Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QRA03_RS12430 Genome accession   NZ_CP129604
Coordinates   2312299..2312583 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus paranthracis strain PUMB_17     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2307299..2317583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA03_RS12395 (QRA03_12405) tmk 2307453..2308079 (+) 627 WP_000677229.1 dTMP kinase -
  QRA03_RS12400 (QRA03_12410) holB 2308115..2309098 (+) 984 WP_338784214.1 DNA polymerase III subunit delta' -
  QRA03_RS12405 (QRA03_12415) - 2309104..2309931 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  QRA03_RS12410 (QRA03_12420) yabA 2309946..2310296 (+) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  QRA03_RS12415 (QRA03_12425) - 2310417..2311157 (+) 741 WP_001055351.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  QRA03_RS12420 (QRA03_12430) - 2311144..2311434 (+) 291 WP_000414340.1 GIY-YIG nuclease family protein -
  QRA03_RS12425 (QRA03_12435) rsmI 2311403..2312278 (+) 876 WP_000267831.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QRA03_RS12430 (QRA03_12440) abrB 2312299..2312583 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QRA03_RS12435 (QRA03_12445) metG 2313101..2315083 (+) 1983 WP_000159679.1 methionine--tRNA ligase -
  QRA03_RS12440 (QRA03_12450) - 2315250..2316017 (+) 768 WP_000895835.1 TatD family hydrolase -
  QRA03_RS12445 (QRA03_12455) rnmV 2316235..2316792 (+) 558 WP_000692830.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=854520 QRA03_RS12430 WP_000843036.1 2312299..2312583(-) (abrB) [Bacillus paranthracis strain PUMB_17]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=854520 QRA03_RS12430 WP_000843036.1 2312299..2312583(-) (abrB) [Bacillus paranthracis strain PUMB_17]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAGCTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851