Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QYT29_RS14070 Genome accession   NZ_CP129560
Coordinates   2829656..2830630 (+) Length   324 a.a.
NCBI ID   WP_021285842.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 727M     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2824656..2835630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYT29_RS14035 (QYT29_14010) rpmG 2825116..2825265 (+) 150 WP_001265709.1 50S ribosomal protein L33 -
  QYT29_RS14040 (QYT29_14015) - 2825474..2826013 (+) 540 WP_000164554.1 5-formyltetrahydrofolate cyclo-ligase -
  QYT29_RS14045 (QYT29_14020) - 2826025..2827488 (+) 1464 WP_001017856.1 rhomboid family protein -
  QYT29_RS14050 (QYT29_14025) - 2827469..2827672 (+) 204 WP_000087559.1 YqgQ family protein -
  QYT29_RS14055 (QYT29_14030) - 2827669..2828655 (+) 987 WP_000161315.1 ROK family glucokinase -
  QYT29_RS14060 (QYT29_14035) - 2828655..2828984 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QYT29_RS14065 (QYT29_14040) - 2828981..2829604 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QYT29_RS14070 (QYT29_14045) comGA 2829656..2830630 (+) 975 WP_021285842.1 competence type IV pilus ATPase ComGA Machinery gene
  QYT29_RS14075 (QYT29_14050) comGB 2830602..2831672 (+) 1071 WP_000776425.1 competence type IV pilus assembly protein ComGB Machinery gene
  QYT29_RS14080 (QYT29_14055) comGC 2831686..2831997 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QYT29_RS14085 (QYT29_14060) comGD 2831975..2832421 (+) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  QYT29_RS14090 (QYT29_14065) comGE 2832408..2832707 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  QYT29_RS14095 (QYT29_14070) comGF 2832625..2833122 (+) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  QYT29_RS14100 (QYT29_14075) - 2833219..2833365 (+) 147 WP_001789879.1 hypothetical protein -
  QYT29_RS14105 (QYT29_14080) - 2833355..2833879 (+) 525 WP_001015120.1 shikimate kinase -
  QYT29_RS14110 (QYT29_14085) gcvT 2834038..2835129 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36887.92 Da        Isoelectric Point: 8.8516

>NTDB_id=854446 QYT29_RS14070 WP_021285842.1 2829656..2830630(+) (comGA) [Staphylococcus aureus strain 727M]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLSLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=854446 QYT29_RS14070 WP_021285842.1 2829656..2830630(+) (comGA) [Staphylococcus aureus strain 727M]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTACGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTATCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGGCCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATTGTCCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

99.691

100

0.997
  comGA Staphylococcus aureus N315

99.691

100

0.997