Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   BVAD3_RS12365 Genome accession   NZ_AP024501
Coordinates   2574189..2574956 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus velezensis strain AD-3     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2569189..2579956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVAD3_RS12345 (BVAD3_24560) - 2569391..2570203 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  BVAD3_RS12350 (BVAD3_24570) ccpN 2570229..2570867 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  BVAD3_RS12355 (BVAD3_24580) glyS 2570968..2573007 (-) 2040 WP_173613469.1 glycine--tRNA ligase subunit beta -
  BVAD3_RS12360 (BVAD3_24590) glyQ 2573000..2573887 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  BVAD3_RS12365 (BVAD3_24600) recO 2574189..2574956 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  BVAD3_RS12370 (BVAD3_24610) - 2574993..2575136 (-) 144 WP_007408286.1 YqzL family protein -
  BVAD3_RS12375 (BVAD3_24620) era 2575292..2576197 (-) 906 WP_007408285.1 GTPase Era -
  BVAD3_RS12380 (BVAD3_24630) - 2576178..2576588 (-) 411 WP_017418172.1 cytidine deaminase -
  BVAD3_RS12385 - 2576712..2577086 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  BVAD3_RS12390 (BVAD3_24650) ybeY 2577067..2577540 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  BVAD3_RS12395 (BVAD3_24660) - 2577541..2579673 (-) 2133 WP_053284931.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=85442 BVAD3_RS12365 WP_007408287.1 2574189..2574956(-) (recO) [Bacillus velezensis strain AD-3]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=85442 BVAD3_RS12365 WP_007408287.1 2574189..2574956(-) (recO) [Bacillus velezensis strain AD-3]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATACTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89

Multiple sequence alignment