Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   QYT31_RS05035 Genome accession   NZ_CP129558
Coordinates   975063..975779 (+) Length   238 a.a.
NCBI ID   WP_064127170.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 670M     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 970063..980779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYT31_RS05005 (QYT31_05000) - 970278..970904 (+) 627 WP_000522384.1 nitroreductase family protein -
  QYT31_RS05010 (QYT31_05005) - 971265..972050 (+) 786 WP_000867951.1 carbon-nitrogen family hydrolase -
  QYT31_RS05015 hld 972650..972730 (-) 81 WP_000046022.1 delta-hemolysin -
  QYT31_RS05020 (QYT31_05015) - 973020..973583 (+) 564 WP_001105704.1 accessory gene regulator AgrB -
  QYT31_RS05025 (QYT31_05020) agrD 973587..973727 (+) 141 WP_000735197.1 cyclic lactone autoinducer peptide AgrD -
  QYT31_RS05030 (QYT31_05025) agrC 973752..975044 (+) 1293 WP_000387809.1 quorum-sensing sensor histidine kinase AgrC -
  QYT31_RS05035 (QYT31_05030) agrA 975063..975779 (+) 717 WP_064127170.1 quorum-sensing response regulator AgrA Regulator
  QYT31_RS05040 (QYT31_05035) - 975851..975960 (+) 110 Protein_965 hypothetical protein -
  QYT31_RS05045 (QYT31_05040) - 976148..977107 (-) 960 WP_001253293.1 carbohydrate kinase family protein -
  QYT31_RS05050 (QYT31_05045) - 977104..978588 (-) 1485 WP_000141414.1 sucrose-6-phosphate hydrolase -
  QYT31_RS05055 (QYT31_05050) - 978737..979687 (-) 951 WP_000790325.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27961.97 Da        Isoelectric Point: 6.0927

>NTDB_id=854388 QYT31_RS05035 WP_064127170.1 975063..975779(+) (agrA) [Staphylococcus aureus strain 670M]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPVELRTRIIDCLETAHTRLQLLSRDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=854388 QYT31_RS05035 WP_064127170.1 975063..975779(+) (agrA) [Staphylococcus aureus strain 670M]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGTAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGTTTACAATTAT
TATCAAGAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.16

100

0.992