Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QYT31_RS02390 Genome accession   NZ_CP129558
Coordinates   497516..497962 (-) Length   148 a.a.
NCBI ID   WP_416471197.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 670M     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 492516..502962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYT31_RS02360 (QYT31_02350) gcvPA 493442..494788 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QYT31_RS02365 (QYT31_02355) gcvT 494808..495899 (-) 1092 WP_000093345.1 glycine cleavage system aminomethyltransferase GcvT -
  QYT31_RS02370 (QYT31_02360) - 496058..496582 (-) 525 WP_001015121.1 shikimate kinase -
  QYT31_RS02375 (QYT31_02365) - 496572..496718 (-) 147 WP_001789879.1 hypothetical protein -
  QYT31_RS02380 (QYT31_02370) comGF 496815..497312 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  QYT31_RS02385 (QYT31_02375) comGE 497230..497529 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  QYT31_RS02390 (QYT31_02380) comGD 497516..497962 (-) 447 WP_416471197.1 competence type IV pilus minor pilin ComGD Machinery gene
  QYT31_RS02395 (QYT31_02385) comGC 497940..498251 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QYT31_RS02400 (QYT31_02390) comGB 498265..499335 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  QYT31_RS02405 (QYT31_02395) comGA 499307..500281 (-) 975 WP_000697219.1 competence type IV pilus ATPase ComGA Machinery gene
  QYT31_RS02410 (QYT31_02400) - 500333..500956 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QYT31_RS02415 (QYT31_02405) - 500953..501282 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QYT31_RS02420 (QYT31_02410) - 501282..502268 (-) 987 WP_000161315.1 ROK family glucokinase -
  QYT31_RS02425 (QYT31_02415) - 502265..502468 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17179.35 Da        Isoelectric Point: 10.3312

>NTDB_id=854371 QYT31_RS02390 WP_416471197.1 497516..497962(-) (comGD) [Staphylococcus aureus strain 670M]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKIGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=854371 QYT31_RS02390 WP_416471197.1 497516..497962(-) (comGD) [Staphylococcus aureus strain 670M]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAATAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993