Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QYT30_RS03815 Genome accession   NZ_CP129557
Coordinates   685592..686038 (+) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 46D     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 680592..691038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYT30_RS03780 (QYT30_03785) - 681087..681290 (+) 204 WP_000087559.1 YqgQ family protein -
  QYT30_RS03785 (QYT30_03790) - 681287..682273 (+) 987 WP_000161315.1 ROK family glucokinase -
  QYT30_RS03790 (QYT30_03795) - 682273..682602 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QYT30_RS03795 (QYT30_03800) - 682599..683222 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QYT30_RS03800 (QYT30_03805) comGA 683274..684248 (+) 975 WP_031872164.1 competence type IV pilus ATPase ComGA Machinery gene
  QYT30_RS03805 (QYT30_03810) comGB 684220..685290 (+) 1071 WP_000776425.1 competence type IV pilus assembly protein ComGB Machinery gene
  QYT30_RS03810 (QYT30_03815) comGC 685304..685614 (+) 311 Protein_707 competence type IV pilus major pilin ComGC -
  QYT30_RS03815 (QYT30_03820) comGD 685592..686038 (+) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  QYT30_RS03820 (QYT30_03825) comGE 686025..686324 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  QYT30_RS03825 (QYT30_03830) comGF 686242..686739 (+) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  QYT30_RS03830 (QYT30_03835) - 686836..686982 (+) 147 WP_001789879.1 hypothetical protein -
  QYT30_RS03835 (QYT30_03840) - 686972..687496 (+) 525 WP_001015120.1 shikimate kinase -
  QYT30_RS03840 (QYT30_03845) gcvT 687655..688746 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  QYT30_RS03845 (QYT30_03850) gcvPA 688766..690112 (+) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=854341 QYT30_RS03815 WP_001796473.1 685592..686038(+) (comGD) [Staphylococcus aureus strain 46D]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=854341 QYT30_RS03815 WP_001796473.1 685592..686038(+) (comGD) [Staphylococcus aureus strain 46D]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAAATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACAATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993