Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QYT30_RS00450 Genome accession   NZ_CP129557
Coordinates   89701..90096 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 46D     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 84701..95096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYT30_RS00425 (QYT30_00435) - 85870..86274 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  QYT30_RS00430 (QYT30_00440) - 86927..87160 (+) 234 WP_000384523.1 DUF1146 family protein -
  QYT30_RS00435 (QYT30_00445) murA 87271..88536 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QYT30_RS00440 (QYT30_00450) fabZ 88570..89010 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QYT30_RS00445 (QYT30_00455) - 89067..89507 (-) 441 WP_000846746.1 YwpF-like family protein -
  QYT30_RS00450 (QYT30_00460) ssb 89701..90096 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  QYT30_RS00455 (QYT30_00465) sceD 90485..91180 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  QYT30_RS00460 (QYT30_00470) tenA 91567..92256 (+) 690 WP_000396068.1 thiaminase II -
  QYT30_RS00465 (QYT30_00475) thiD 92249..93079 (+) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QYT30_RS00470 (QYT30_00480) thiM 93063..93854 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  QYT30_RS00475 (QYT30_00485) thiE 93856..94497 (+) 642 WP_000483161.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=854324 QYT30_RS00450 WP_000932694.1 89701..90096(+) (ssb) [Staphylococcus aureus strain 46D]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=854324 QYT30_RS00450 WP_000932694.1 89701..90096(+) (ssb) [Staphylococcus aureus strain 46D]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992