Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BVAD3_RS10795 Genome accession   NZ_AP024501
Coordinates   2243151..2243759 (+) Length   202 a.a.
NCBI ID   WP_095060816.1    Uniprot ID   -
Organism   Bacillus velezensis strain AD-3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2238151..2248759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVAD3_RS10755 (BVAD3_21320) - 2239171..2239677 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  BVAD3_RS10760 (BVAD3_21330) - 2239816..2240229 (+) 414 WP_017418017.1 hypothetical protein -
  BVAD3_RS10765 (BVAD3_21340) - 2240259..2240726 (-) 468 WP_105937586.1 YppG family protein -
  BVAD3_RS10770 (BVAD3_21350) - 2240913..2241095 (+) 183 WP_003153532.1 YppF family protein -
  BVAD3_RS10775 (BVAD3_21360) - 2241134..2241502 (-) 369 WP_061862317.1 YppE family protein -
  BVAD3_RS10780 (BVAD3_21370) - 2241548..2241793 (-) 246 WP_014418233.1 DUF5446 family protein -
  BVAD3_RS10785 sspM 2241999..2242103 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  BVAD3_RS10790 (BVAD3_21380) - 2242147..2243109 (-) 963 WP_163094323.1 DUF2515 domain-containing protein -
  BVAD3_RS10795 (BVAD3_21390) recU 2243151..2243759 (+) 609 WP_095060816.1 Holliday junction resolvase RecU Machinery gene
  BVAD3_RS10800 (BVAD3_21400) - 2243798..2246581 (+) 2784 WP_021494227.1 PBP1A family penicillin-binding protein -
  BVAD3_RS10805 (BVAD3_21410) - 2246659..2247150 (-) 492 WP_021494228.1 YpoC family protein -
  BVAD3_RS10810 (BVAD3_21420) nth 2247147..2247806 (-) 660 WP_163094324.1 endonuclease III -
  BVAD3_RS10815 (BVAD3_21430) dnaD 2247825..2248523 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23694.85 Da        Isoelectric Point: 9.6872

>NTDB_id=85432 BVAD3_RS10795 WP_095060816.1 2243151..2243759(+) (recU) [Bacillus velezensis strain AD-3]
MIRYPNGKTFQPNKTVSSQNSQKRTHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=85432 BVAD3_RS10795 WP_095060816.1 2243151..2243759(+) (recU) [Bacillus velezensis strain AD-3]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGACCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAACATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896

Multiple sequence alignment