Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QYT34_RS13055 Genome accession   NZ_CP129555
Coordinates   2574752..2575726 (-) Length   324 a.a.
NCBI ID   WP_031889382.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 614E     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2569752..2580726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYT34_RS13015 (QYT34_12990) gcvT 2570253..2571344 (-) 1092 WP_000093347.1 glycine cleavage system aminomethyltransferase GcvT -
  QYT34_RS13020 (QYT34_12995) - 2571503..2572027 (-) 525 WP_001015125.1 shikimate kinase -
  QYT34_RS13025 (QYT34_13000) - 2572017..2572163 (-) 147 WP_001789879.1 hypothetical protein -
  QYT34_RS13030 (QYT34_13005) comGF 2572260..2572757 (-) 498 WP_001794055.1 competence type IV pilus minor pilin ComGF Machinery gene
  QYT34_RS13035 (QYT34_13010) comGE 2572675..2572974 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  QYT34_RS13040 (QYT34_13015) comGD 2572961..2573407 (-) 447 WP_001791207.1 competence type IV pilus minor pilin ComGD Machinery gene
  QYT34_RS13045 (QYT34_13020) comGC 2573385..2573696 (-) 312 WP_000472257.1 competence type IV pilus major pilin ComGC Machinery gene
  QYT34_RS13050 (QYT34_13025) comGB 2573710..2574780 (-) 1071 WP_000776412.1 competence type IV pilus assembly protein ComGB Machinery gene
  QYT34_RS13055 (QYT34_13030) comGA 2574752..2575726 (-) 975 WP_031889382.1 competence type IV pilus ATPase ComGA Machinery gene
  QYT34_RS13060 (QYT34_13035) - 2575778..2576401 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QYT34_RS13065 (QYT34_13040) - 2576398..2576727 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QYT34_RS13070 (QYT34_13045) - 2576727..2577713 (-) 987 WP_000161314.1 ROK family glucokinase -
  QYT34_RS13075 (QYT34_13050) - 2577710..2577913 (-) 204 WP_000087561.1 YqgQ family protein -
  QYT34_RS13080 (QYT34_13055) - 2577894..2579357 (-) 1464 WP_001017873.1 rhomboid family protein -
  QYT34_RS13085 (QYT34_13060) - 2579369..2579908 (-) 540 WP_000164553.1 5-formyltetrahydrofolate cyclo-ligase -
  QYT34_RS13090 (QYT34_13065) rpmG 2580117..2580266 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36927.98 Da        Isoelectric Point: 8.8516

>NTDB_id=854272 QYT34_RS13055 WP_031889382.1 2574752..2575726(-) (comGA) [Staphylococcus aureus strain 614E]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKTGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=854272 QYT34_RS13055 WP_031889382.1 2574752..2575726(-) (comGA) [Staphylococcus aureus strain 614E]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATAGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATATATTTTTTGAGAATATCAACTTTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAATAAGAAACAAGGATTACTATTGT
TTAGTGGGCCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATCGTGCAAATTAATGTGAATGATAAAACTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCTGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGCATTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

99.691

100

0.997
  comGA Staphylococcus aureus N315

99.691

100

0.997