Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   QYT32_RS12845 Genome accession   NZ_CP129553
Coordinates   2639104..2639820 (-) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain 704D     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2634104..2644820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYT32_RS12830 (QYT32_12830) - 2635191..2636141 (+) 951 WP_123090051.1 LacI family DNA-binding transcriptional regulator -
  QYT32_RS12835 (QYT32_12835) - 2636290..2637774 (+) 1485 WP_001791588.1 sucrose-6-phosphate hydrolase -
  QYT32_RS12840 (QYT32_12840) - 2637771..2638730 (+) 960 WP_001253292.1 carbohydrate kinase family protein -
  QYT32_RS12845 (QYT32_12845) agrA 2639104..2639820 (-) 717 WP_000688492.1 quorum-sensing response regulator AgrA Regulator
  QYT32_RS12850 (QYT32_12850) agrC 2639839..2641131 (-) 1293 WP_416471444.1 quorum-sensing sensor histidine kinase AgrC -
  QYT32_RS12855 (QYT32_12855) agrD 2641156..2641296 (-) 141 WP_000735197.1 cyclic lactone autoinducer peptide AgrD -
  QYT32_RS12860 (QYT32_12860) - 2641300..2641863 (-) 564 WP_001105709.1 accessory gene regulator AgrB -
  QYT32_RS12865 hld 2642153..2642233 (+) 81 WP_000046022.1 delta-hemolysin -
  QYT32_RS12870 (QYT32_12870) - 2642835..2643620 (-) 786 WP_000867948.1 carbon-nitrogen family hydrolase -
  QYT32_RS12875 (QYT32_12875) - 2643981..2644607 (-) 627 WP_000522388.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=854238 QYT32_RS12845 WP_000688492.1 2639104..2639820(-) (agrA) [Staphylococcus aureus strain 704D]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=854238 QYT32_RS12845 WP_000688492.1 2639104..2639820(-) (agrA) [Staphylococcus aureus strain 704D]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATCAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACGTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCAAAAGATAATAGCGTTGAAACGATTGAGTTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTCAGATGTCATAATAGCTTTGTCGTCAATCGTCATAATATCGAATCTATTG
ATTCGAAAGAGCGTATTGTTTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1