Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QY866_RS06550 Genome accession   NZ_CP129530
Coordinates   1308615..1309481 (+) Length   288 a.a.
NCBI ID   WP_099947343.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain A1262     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1303615..1314481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY866_RS06520 (QY866_06510) - 1304480..1305382 (+) 903 WP_341843926.1 SGNH/GDSL hydrolase family protein -
  QY866_RS06525 (QY866_06515) - 1305395..1306024 (+) 630 WP_341843927.1 YpmS family protein -
  QY866_RS06530 (QY866_06520) - 1306035..1306259 (+) 225 WP_016265150.1 YozE family protein -
  QY866_RS06535 (QY866_06525) lepB 1306284..1306814 (+) 531 WP_337457563.1 signal peptidase I -
  QY866_RS06540 (QY866_06530) ylqF 1306946..1307797 (+) 852 WP_025015771.1 ribosome biogenesis GTPase YlqF -
  QY866_RS06545 (QY866_06535) - 1307799..1308560 (+) 762 WP_112217684.1 ribonuclease HII -
  QY866_RS06550 (QY866_06540) dprA 1308615..1309481 (+) 867 WP_099947343.1 DNA-processing protein DprA Machinery gene
  QY866_RS06555 (QY866_06545) - 1309582..1310448 (+) 867 WP_099713204.1 NAD(P)H-binding protein -
  QY866_RS06560 (QY866_06550) - 1310477..1310911 (+) 435 WP_011374692.1 Rrf2 family transcriptional regulator -
  QY866_RS06565 (QY866_06555) topA 1311162..1313246 (+) 2085 WP_016265142.1 type I DNA topoisomerase -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31875.87 Da        Isoelectric Point: 8.5888

>NTDB_id=854109 QY866_RS06550 WP_099947343.1 1308615..1309481(+) (dprA) [Latilactobacillus sakei strain A1262]
MLTKNQLLLKVHLAAGFGPISELRLAAWLATSHNWALSALEIAQITRLPERYWPTFQASFQSTTLQRQCIEHEVRTTYLT
ILDKDYPQRLLETYLPPVLLFYRGDLRLLKQPCLAVVGARQATHYSKQSLEQLLQGLTATTIISGLAQGADAMAHEVALQ
RGLAPIGVIGTGINCSYPPQNEHLQQVVAEKGLLLSEYALGTPARRYQFPARNKIIAGLCHSLIVTEAWHKSGSLITANL
ALQANRNVYAIPGRIDQSLSQGCNQLIAAGATPLLDKNILIEELRYFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=854109 QY866_RS06550 WP_099947343.1 1308615..1309481(+) (dprA) [Latilactobacillus sakei strain A1262]
GTGTTAACTAAAAATCAATTACTCTTAAAAGTACATTTAGCGGCGGGTTTTGGGCCTATTAGTGAATTACGCTTGGCGGC
GTGGCTAGCAACCAGTCATAATTGGGCGTTATCGGCGTTAGAAATTGCGCAGATTACGCGCTTGCCGGAACGTTATTGGC
CGACTTTTCAAGCAAGTTTTCAAAGTACAACCTTACAACGCCAATGCATCGAACATGAAGTTCGAACGACTTATTTAACC
ATCTTAGATAAAGATTACCCACAACGCTTATTGGAAACCTATTTGCCGCCCGTTTTGTTATTTTATCGTGGTGATTTAAG
ATTGTTAAAACAGCCATGTCTCGCGGTAGTCGGGGCGCGTCAAGCGACTCATTATTCTAAACAATCACTAGAACAGTTAT
TACAAGGACTAACTGCCACTACGATTATTAGTGGGTTAGCACAAGGAGCGGATGCGATGGCCCACGAAGTTGCCTTGCAG
CGTGGTTTGGCCCCAATTGGGGTGATTGGCACGGGCATTAATTGCAGTTATCCACCACAAAATGAGCATTTACAACAGGT
AGTTGCTGAAAAAGGTTTGTTATTATCTGAATACGCTCTTGGTACACCAGCCCGGCGCTATCAATTTCCAGCCCGTAATA
AAATCATCGCGGGGTTATGTCATAGTTTAATTGTGACGGAAGCATGGCACAAGAGTGGTAGCTTGATTACCGCTAACTTG
GCCCTTCAAGCTAATCGCAATGTCTATGCAATTCCGGGGCGCATTGATCAATCACTGTCACAGGGGTGCAACCAATTAAT
CGCCGCGGGAGCGACACCATTGTTAGATAAAAACATATTAATAGAAGAACTACGTTATTTTGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

98.264

100

0.983