Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   QY866_RS02280 Genome accession   NZ_CP129530
Coordinates   476424..477113 (-) Length   229 a.a.
NCBI ID   WP_056948148.1    Uniprot ID   A0AAX0VAL7
Organism   Latilactobacillus sakei strain A1262     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 471424..482113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY866_RS02270 (QY866_02265) rpoC 472030..475674 (+) 3645 WP_096584096.1 DNA-directed RNA polymerase subunit beta' -
  QY866_RS02275 (QY866_02270) - 475848..476420 (+) 573 WP_056948146.1 isochorismatase family protein -
  QY866_RS02280 (QY866_02275) comC 476424..477113 (-) 690 WP_056948148.1 A24 family peptidase Machinery gene
  QY866_RS02285 (QY866_02280) rpsL 477394..477807 (+) 414 WP_004270179.1 30S ribosomal protein S12 -
  QY866_RS02290 (QY866_02285) rpsG 477897..478367 (+) 471 WP_004270185.1 30S ribosomal protein S7 -
  QY866_RS02295 (QY866_02290) fusA 478463..480550 (+) 2088 WP_016265721.1 elongation factor G -
  QY866_RS02300 (QY866_02295) - 481121..481672 (-) 552 WP_056948150.1 isochorismatase family cysteine hydrolase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26176.47 Da        Isoelectric Point: 7.1616

>NTDB_id=854089 QY866_RS02280 WP_056948148.1 476424..477113(-) (comC) [Latilactobacillus sakei strain A1262]
MLLYLIIFYSGACCASFLTVCAWRLPIEKSIITPRSHCDCCQQPLAWYDLLPLFSYLYLHGHCRTCHAQIKPTFLFSELI
GGLLACFIFSESLSWDLAYLLVILFYISLVDLFYYILYPIPLFASLAPLFYLYWPQNHWLGAIVFCCGLLLTTYWASGFG
FGDVELLTILTLWVGLESVLRILLAACLICILFQGIKKIWPSPKQATRQIPFIPYISMGVVIILLQTPQ

Nucleotide


Download         Length: 690 bp        

>NTDB_id=854089 QY866_RS02280 WP_056948148.1 476424..477113(-) (comC) [Latilactobacillus sakei strain A1262]
ATGTTACTTTATTTAATCATCTTTTATAGCGGTGCTTGTTGCGCCTCATTTCTAACAGTTTGCGCCTGGCGCTTACCCAT
CGAAAAGTCCATTATCACACCACGTTCGCACTGCGATTGCTGTCAGCAACCACTGGCTTGGTATGATTTATTACCACTAT
TCAGCTACTTATACTTACATGGCCACTGCCGCACTTGTCATGCTCAGATTAAGCCCACTTTTTTATTCAGCGAACTAATT
GGTGGTCTATTGGCCTGCTTCATTTTTAGCGAATCCCTTTCTTGGGACCTCGCTTATTTACTCGTGATTCTTTTTTACAT
CAGTCTCGTTGACCTCTTCTACTATATTCTCTATCCAATCCCCTTATTCGCATCACTGGCGCCCCTCTTCTATTTGTATT
GGCCACAGAATCATTGGCTAGGAGCCATCGTCTTTTGTTGCGGGTTGTTGCTCACCACTTACTGGGCGTCTGGTTTTGGT
TTTGGCGATGTCGAGTTACTCACTATCCTAACGTTGTGGGTCGGCCTTGAATCCGTTTTGCGAATTCTCTTAGCAGCCTG
TTTAATCTGTATTCTATTTCAAGGCATCAAAAAAATCTGGCCATCGCCTAAACAAGCGACGCGCCAGATTCCTTTTATTC
CCTATATATCGATGGGAGTGGTGATAATACTCCTACAAACACCACAATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(99-193)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(11-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Latilactobacillus sakei subsp. sakei 23K

98.253

100

0.983