Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/comE1   Type   Regulator
Locus tag   V6U70_RS07595 Genome accession   NZ_CP145868
Coordinates   1673443..1674180 (-) Length   245 a.a.
NCBI ID   WP_002884816.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS12     
Function   activate transcription of early competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1668443..1679180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U70_RS07575 (V6U70_07570) - 1669767..1670015 (-) 249 WP_002884680.1 KH domain-containing protein -
  V6U70_RS07580 (V6U70_07575) rpsP 1670027..1670299 (-) 273 WP_002884675.1 30S ribosomal protein S16 -
  V6U70_RS07585 (V6U70_07580) - 1670463..1671842 (-) 1380 WP_410532315.1 hypothetical protein -
  V6U70_RS07590 (V6U70_07585) - 1671954..1673132 (-) 1179 WP_410532316.1 sensor histidine kinase -
  V6U70_RS07595 (V6U70_07590) comE/comE1 1673443..1674180 (-) 738 WP_002884816.1 LytR/AlgR family response regulator transcription factor Regulator
  V6U70_RS07600 (V6U70_07595) - 1674394..1675707 (+) 1314 WP_270334474.1 matrixin family metalloprotease -
  V6U70_RS07605 (V6U70_07600) tehB 1676487..1677365 (+) 879 WP_048790333.1 SAM-dependent methyltransferase TehB -
  V6U70_RS07610 (V6U70_07605) - 1677448..1678200 (-) 753 WP_014634886.1 DUF4767 domain-containing protein -
  V6U70_RS07615 (V6U70_07610) - 1678297..1678647 (-) 351 Protein_1459 LLM class flavin-dependent oxidoreductase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28066.00 Da        Isoelectric Point: 4.7123

>NTDB_id=854089 V6U70_RS07595 WP_002884816.1 1673443..1674180(-) (comE/comE1) [Streptococcus salivarius strain KSS12]
MLSIIVLEDDALQRHRVSRLLDEAVEESKAVVDGITFYEQGQELLDADRGSGKSMVYLLDIDLKNQTKQGLDIGLEIRKE
DLKAQIAFVTAYSEFMPLTFRYKIQALDFVDKSMEDTDLKRALVELLDFAYSQVEQETKAQSLTVKTDKNDVNIPYDDIL
YIETAPVPHKLIAHTKSNLVEFYGKIAEVAKLDDIFFQTHRSFVVNVSNVTSVDRTANMVFFEGDESCLLSRTRKKELLE
RLKNR

Nucleotide


Download         Length: 738 bp        

>NTDB_id=854089 V6U70_RS07595 WP_002884816.1 1673443..1674180(-) (comE/comE1) [Streptococcus salivarius strain KSS12]
ATGCTTTCTATTATCGTCCTTGAAGATGATGCCTTGCAGCGTCATCGTGTTAGTCGTTTATTGGACGAAGCAGTTGAGGA
GTCGAAGGCCGTTGTTGATGGGATTACCTTTTATGAGCAAGGTCAGGAATTGTTAGATGCTGATAGAGGTTCGGGTAAAT
CCATGGTTTATCTTTTGGATATTGACCTTAAAAATCAAACGAAGCAGGGACTAGATATTGGGCTTGAAATTCGTAAGGAA
GACTTGAAAGCACAAATCGCTTTTGTTACAGCCTACTCTGAGTTTATGCCCTTGACCTTCCGTTATAAGATTCAAGCTCT
GGACTTTGTTGATAAGTCCATGGAAGATACAGATCTTAAGAGAGCCTTGGTAGAACTTTTAGATTTTGCATATTCGCAGG
TTGAGCAAGAAACCAAGGCACAGAGTCTAACGGTAAAAACGGATAAAAATGATGTTAATATTCCTTATGATGACATTTTA
TACATTGAAACAGCCCCTGTGCCACATAAGTTGATTGCTCACACCAAGTCAAATCTAGTAGAATTCTATGGAAAAATTGC
AGAAGTAGCGAAATTGGATGATATTTTCTTCCAAACGCATCGCTCTTTTGTTGTCAATGTGAGTAATGTGACAAGTGTGG
ATCGTACGGCTAATATGGTCTTCTTTGAGGGAGACGAGTCATGCCTCCTCTCGCGGACACGTAAAAAGGAACTTTTGGAA
CGATTGAAAAATCGTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-123)

LytTr DNA-binding domain (LytTR)

(152-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/comE1 Streptococcus equinus JB1

37.037

99.184

0.367