Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   QY867_RS05675 Genome accession   NZ_CP129529
Coordinates   1116328..1118595 (+) Length   755 a.a.
NCBI ID   WP_099947352.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain A1291     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1111328..1123595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY867_RS05640 (QY867_05625) - 1111487..1112575 (+) 1089 WP_099947354.1 CAP-associated domain-containing protein -
  QY867_RS05645 (QY867_05630) - 1112599..1112889 (+) 291 WP_076632420.1 YlbG family protein -
  QY867_RS05650 (QY867_05635) rsmD 1112894..1113448 (+) 555 WP_011374774.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  QY867_RS05655 (QY867_05640) coaD 1113461..1113958 (+) 498 WP_011374773.1 pantetheine-phosphate adenylyltransferase -
  QY867_RS05660 (QY867_05645) - 1113960..1115006 (+) 1047 WP_056946687.1 SepM family pheromone-processing serine protease -
  QY867_RS05665 (QY867_05650) comEA 1115078..1115785 (+) 708 WP_231952379.1 helix-hairpin-helix domain-containing protein Machinery gene
  QY867_RS05670 (QY867_05655) - 1115843..1116331 (+) 489 WP_011374770.1 ComE operon protein 2 -
  QY867_RS05675 (QY867_05660) comEC 1116328..1118595 (+) 2268 WP_099947352.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QY867_RS05680 (QY867_05665) holA 1118592..1119620 (+) 1029 WP_011374768.1 DNA polymerase III subunit delta -
  QY867_RS05685 (QY867_05670) rpsT 1119689..1119943 (-) 255 WP_011374767.1 30S ribosomal protein S20 -
  QY867_RS05690 (QY867_05675) rpsO 1120222..1120491 (+) 270 WP_011374766.1 30S ribosomal protein S15 -
  QY867_RS05695 (QY867_05680) - 1120719..1122437 (+) 1719 WP_056946680.1 ribonuclease J -
  QY867_RS05700 (QY867_05685) - 1122526..1123473 (+) 948 WP_341843918.1 hypothetical protein -

Sequence

Protein


Download         Length: 755 a.a.        Molecular weight: 85387.17 Da        Isoelectric Point: 10.0762

>NTDB_id=854071 QY867_RS05675 WP_099947352.1 1116328..1118595(+) (comEC) [Latilactobacillus sakei strain A1291]
MKNNWIYPVICLISLNSLMLGGQSWLTWSLLLLAFVKLISLRQTQITIMTIGLCLVYGGRFWISYHSVTQPQQPVAQYFK
VQPDAIQVAGDSVQLTAIGQQDGQTIKAYYRCQTFAEKRRWQQVRHPVLFYGEKDFKRIQGATNQNEFDYARFLAQQKRC
FYQLTLAKKTTFALRRPSSGLDWLHYWRQTCALYLRKLPTALRFHAQTLLLGLREAQVDHYQVVLGHLGIIHLLSLSGLH
VFYLVQVIRWCATYCRIPREWLNCMLFGLLPVYALLVGGTTSISRAIALILSRLLCKQLGIRQSRLDSWSLVLLVNLFWQ
PYLLHSMGGILSYLMAFALIYIGEGSTFKVAYWLSLLSLPVCLRFNYRWHVLTIMMNALVTPIYLPIVLGLVIVASVMLP
VSNLVVNGCEWLLQLIYKGLGLVAQIPHAMITFGKIPLLPLLLIVTVSLLLIDGQAISNQWRKRLKRTLVSLYLASFLAI
HFNPTGRVVMFDIGQGDSLLIQTPFNRHQLLIDTGGRLALPQAAWQRRAQVSRAEKVTVNYLYSQGVDHIDAVALSHQDA
DHIGDLNQILKQIRVDRIICAAGLPQNRQFQRQIRPFLATVQIEPYLAGAAFKVGSQKFNVLAPTKPGKGENSDSLVLQA
QIGGASWLFTGDLEQEGERAIIERYPQLTVDYLKVGHHGSKTASDPTVIKKLHLKGALISTGRENRYGHPHQETLTTLQA
AKVPYWLTAQQGMLTWAYGPGQSEKLQTTIKDSEK

Nucleotide


Download         Length: 2268 bp        

>NTDB_id=854071 QY867_RS05675 WP_099947352.1 1116328..1118595(+) (comEC) [Latilactobacillus sakei strain A1291]
ATGAAAAACAACTGGATTTATCCAGTTATTTGTTTAATCAGTTTAAATAGCTTAATGCTTGGGGGGCAATCTTGGTTAAC
CTGGAGCTTATTATTATTGGCTTTTGTCAAATTAATAAGTCTCAGACAAACTCAGATAACGATTATGACGATCGGCTTAT
GCCTTGTTTACGGGGGCCGCTTTTGGATAAGCTATCATAGTGTGACGCAACCGCAACAACCGGTAGCACAGTACTTTAAA
GTGCAACCCGATGCGATTCAAGTAGCGGGCGATAGTGTCCAATTAACGGCAATCGGCCAACAAGATGGTCAGACTATTAA
GGCTTATTATCGCTGCCAAACGTTCGCCGAGAAGCGGCGATGGCAGCAAGTACGACACCCCGTTTTGTTCTATGGGGAAA
AAGATTTTAAACGTATACAGGGTGCTACCAATCAAAATGAGTTTGATTATGCCCGTTTTTTAGCGCAACAGAAGCGCTGC
TTTTACCAACTGACGTTAGCCAAAAAAACAACTTTTGCGCTGAGACGCCCTAGTAGCGGTTTGGATTGGCTACATTATTG
GCGCCAAACGTGTGCACTGTATTTACGTAAGTTACCAACAGCACTACGGTTTCATGCGCAGACGTTACTATTAGGTTTGC
GGGAAGCGCAAGTTGACCATTACCAGGTTGTTTTGGGCCACTTAGGGATTATTCATCTCTTAAGTCTATCAGGGTTGCAC
GTGTTTTATTTAGTGCAAGTCATTCGGTGGTGTGCGACTTATTGCCGCATACCGCGTGAGTGGTTAAACTGTATGTTATT
TGGGCTATTGCCGGTATATGCCTTACTGGTTGGTGGTACGACAAGCATTAGTCGCGCGATTGCGCTTATTTTATCCCGGT
TACTTTGCAAACAGTTGGGCATTCGGCAATCAAGGTTAGATAGTTGGAGTTTAGTATTACTGGTCAATTTATTCTGGCAG
CCTTATTTGCTACATAGTATGGGCGGGATTTTAAGTTATTTGATGGCCTTTGCGCTCATTTATATTGGTGAGGGTAGCAC
TTTTAAAGTTGCTTACTGGCTAAGTTTATTGAGTTTGCCGGTTTGCTTACGCTTTAATTATCGCTGGCATGTGCTGACGA
TAATGATGAATGCCTTGGTAACGCCTATCTATCTGCCAATTGTGCTAGGTTTGGTGATTGTAGCGAGTGTGATGTTACCT
GTTAGCAATCTAGTGGTTAACGGATGTGAGTGGCTGTTACAGTTGATTTACAAAGGCTTAGGACTAGTTGCTCAAATTCC
CCATGCGATGATTACGTTTGGTAAAATACCATTATTACCGTTACTATTGATTGTGACGGTCAGTCTCTTGTTAATCGATG
GCCAGGCAATTAGTAATCAATGGCGTAAACGGCTGAAACGCACATTGGTAAGTTTGTATCTGGCTAGTTTTTTGGCGATT
CATTTTAATCCGACTGGTCGGGTGGTCATGTTTGATATTGGTCAAGGTGATAGTCTGTTGATTCAGACGCCGTTTAACCG
GCATCAGCTTTTAATCGATACTGGTGGTCGCCTAGCGCTACCGCAAGCAGCTTGGCAACGGCGGGCGCAGGTTTCACGAG
CGGAAAAAGTAACGGTTAATTATCTCTATAGCCAAGGAGTAGATCACATTGATGCGGTGGCACTTTCTCATCAGGATGCC
GATCATATTGGTGATTTGAACCAGATTTTAAAACAAATTCGTGTTGATCGAATCATTTGTGCTGCCGGATTACCGCAAAA
TCGGCAATTTCAAAGACAAATTCGACCATTTTTAGCAACGGTTCAGATAGAACCCTATTTAGCCGGGGCCGCTTTTAAAG
TGGGATCGCAAAAATTTAACGTCTTAGCACCGACTAAGCCGGGAAAAGGCGAAAATAGTGATTCGTTAGTCTTACAGGCA
CAAATTGGTGGGGCTAGCTGGCTTTTTACAGGAGATCTAGAACAAGAAGGTGAACGGGCAATTATCGAGCGGTATCCACA
ATTAACCGTCGATTATTTAAAAGTTGGCCATCATGGTAGTAAAACGGCTAGTGACCCCACCGTGATTAAAAAATTGCACT
TAAAAGGCGCATTAATCTCAACCGGCAGAGAGAATCGTTATGGTCATCCGCACCAGGAAACTTTGACGACTTTGCAAGCG
GCCAAAGTGCCTTATTGGCTAACGGCGCAGCAGGGGATGTTGACCTGGGCGTACGGTCCCGGTCAAAGCGAAAAACTGCA
AACAACAATAAAGGATAGTGAAAAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(209-452)

Metallo-beta-lactamase superfamily (Lactamase_B)

(494-702)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Latilactobacillus sakei subsp. sakei 23K

99.603

100

0.996