Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   V6U70_RS04135 Genome accession   NZ_CP145868
Coordinates   833092..834762 (+) Length   556 a.a.
NCBI ID   WP_070476335.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 828092..839762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U70_RS04105 (V6U70_04105) - 828477..829238 (+) 762 WP_022496510.1 hypothetical protein -
  V6U70_RS04110 (V6U70_04110) xseA 829425..830753 (+) 1329 WP_021144302.1 exodeoxyribonuclease VII large subunit -
  V6U70_RS04115 (V6U70_04115) - 830743..830958 (+) 216 WP_002884058.1 exodeoxyribonuclease VII small subunit -
  V6U70_RS04120 (V6U70_04120) - 830958..831830 (+) 873 WP_070476336.1 polyprenyl synthetase family protein -
  V6U70_RS04125 (V6U70_04125) - 831823..832650 (+) 828 WP_002884054.1 TlyA family RNA methyltransferase -
  V6U70_RS04130 (V6U70_04130) - 832637..833083 (+) 447 WP_002890762.1 arginine repressor -
  V6U70_RS04135 (V6U70_04135) recN 833092..834762 (+) 1671 WP_070476335.1 DNA repair protein RecN Machinery gene
  V6U70_RS04140 (V6U70_04140) - 834832..835674 (+) 843 WP_410532919.1 DegV family protein -
  V6U70_RS04145 (V6U70_04145) - 835667..836542 (+) 876 WP_410532921.1 SGNH/GDSL hydrolase family protein -
  V6U70_RS04150 (V6U70_04150) - 836535..837107 (+) 573 WP_038675837.1 YpmS family protein -
  V6U70_RS04155 (V6U70_04155) - 837244..837519 (+) 276 WP_002884048.1 HU family DNA-binding protein -
  V6U70_RS04160 (V6U70_04160) - 837579..837779 (+) 201 WP_002883994.1 hypothetical protein -
  V6U70_RS04165 (V6U70_04165) - 837841..838776 (-) 936 WP_045772084.1 dihydroorotate oxidase -
  V6U70_RS04170 (V6U70_04170) - 839032..839724 (+) 693 WP_002884137.1 phosphoglycerate mutase -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62406.49 Da        Isoelectric Point: 4.5371

>NTDB_id=854056 V6U70_RS04135 WP_070476335.1 833092..834762(+) (recN) [Streptococcus salivarius strain KSS12]
MLLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGARASSEVVRHSASKAEIQGFFSIEQNPALVSIL
EDNGIPVEDELIIRREIFQNGRSVSRINGQMVNLTTLKAVGHFLVDIHGQHDQEELMKPALHIIMLDAFGDKEFFQTKKE
YQEYFDRYRELRKAVLEKQKNEQEHKARIEMLAFQISEIEAVSLKSGEDLALMQERDKLLNHKQIADTLTNAYVMLDNED
FSSLSNVRSAMNDLQSLEEYDSDYKELSGNLSEAYYVLEDVTKQLGDFLDNLDFDAGRLQEIEHRLDTINAITRKYGGTV
DDVLDYLENSSKEYNLLTGNSSSSDAMEQELKQLEKDLLASAETLQTARHQIATALEAEIKSELCDLYMDKADFKVTFTK
GKFNRDGNEQVEFYISTNPGEGFKPLVKVASGGELSRLMLAIKSAFARKEDKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SHGQVLAISHLPQVIAIADYQFFISKESDNETTVSRVRLLTPEERVQEIAKMLAGDNVTEAALSQARALLKVDDFL

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=854056 V6U70_RS04135 WP_070476335.1 833092..834762(+) (recN) [Streptococcus salivarius strain KSS12]
ATGCTTCTCGAAATTACGATAAAGAATTTCGCAATTATTGAAGAGATTTCTCTAAACTTTGAGAATGGTATGACCGTCCT
TACTGGTGAAACAGGTGCTGGTAAGTCCATTATTATAGATGCTATGAATCTTATGTTGGGTGCTAGGGCTTCTAGTGAGG
TCGTCCGTCATTCAGCATCTAAGGCTGAAATTCAGGGCTTCTTTTCAATCGAACAAAATCCTGCCTTGGTTAGTATCTTG
GAAGATAATGGAATTCCTGTTGAGGATGAATTGATTATCCGTCGTGAAATCTTCCAAAATGGTAGAAGTGTTAGTCGTAT
CAATGGGCAGATGGTCAATTTAACGACGCTTAAGGCTGTTGGGCACTTCTTGGTAGATATCCATGGACAACATGACCAGG
AAGAGCTTATGAAACCTGCTCTGCATATTATCATGCTTGATGCCTTTGGTGACAAGGAATTTTTCCAGACTAAGAAAGAG
TACCAGGAGTATTTTGACCGCTATCGTGAGTTAAGAAAAGCTGTTCTAGAAAAGCAGAAAAATGAGCAGGAGCATAAGGC
TCGAATTGAAATGCTAGCTTTTCAGATTTCAGAAATTGAAGCAGTCTCTCTAAAATCAGGAGAAGATTTGGCTTTGATGC
AGGAGCGAGACAAGCTTCTTAATCATAAGCAAATTGCTGATACCTTAACAAATGCCTATGTCATGCTGGATAATGAAGAT
TTTTCAAGCCTTTCAAATGTTCGTTCTGCCATGAATGACCTCCAGTCTCTTGAAGAGTATGACTCTGATTACAAAGAACT
CTCTGGAAATCTATCAGAAGCCTATTATGTTCTGGAAGATGTCACTAAGCAACTAGGTGATTTTTTGGATAATCTGGACT
TTGATGCTGGGCGTTTACAAGAGATTGAACACCGCTTAGATACCATTAATGCCATTACTCGTAAATATGGTGGGACTGTC
GATGACGTCTTGGATTATCTGGAAAATTCAAGTAAAGAATACAATCTTCTGACAGGCAACTCTAGCTCGTCAGATGCTAT
GGAACAAGAGCTTAAGCAACTTGAAAAGGACCTGCTTGCGTCTGCGGAGACCCTACAAACAGCACGCCATCAAATTGCTA
CGGCTCTTGAAGCTGAGATTAAGAGCGAGTTGTGTGACCTCTATATGGATAAGGCTGATTTTAAAGTCACCTTTACTAAG
GGGAAATTTAATCGTGATGGTAATGAGCAGGTTGAGTTTTACATCTCAACCAATCCAGGTGAAGGCTTTAAACCGCTTGT
TAAGGTAGCTTCAGGTGGTGAATTATCACGACTCATGTTAGCGATTAAGTCAGCCTTTGCCCGCAAAGAAGATAAAACAA
GTATCGTCTTTGATGAGGTTGACACTGGCGTTTCAGGACGTGTTGCCCAAGCCATCGCTCAGAAGATTCATAAGATTGGG
AGTCATGGTCAGGTCTTGGCCATCAGTCACCTTCCGCAAGTTATTGCTATTGCTGATTATCAGTTTTTTATTTCTAAGGA
AAGCGATAATGAGACAACAGTCTCTCGTGTTCGTCTTTTGACACCTGAGGAAAGGGTGCAAGAAATCGCTAAGATGTTAG
CAGGTGATAACGTGACGGAGGCTGCCTTGAGCCAAGCAAGAGCTTTGTTAAAGGTGGATGACTTTCTTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.133

100

0.453