Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   QY867_RS02250 Genome accession   NZ_CP129529
Coordinates   452966..453526 (+) Length   186 a.a.
NCBI ID   WP_056947508.1    Uniprot ID   A0AAX0VCZ0
Organism   Latilactobacillus sakei strain A1291     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 447966..458526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY867_RS02225 (QY867_02225) - 448124..449236 (+) 1113 WP_035146631.1 PIN/TRAM domain-containing protein -
  QY867_RS02230 (QY867_02230) cysS 449667..451073 (+) 1407 WP_337457735.1 cysteine--tRNA ligase -
  QY867_RS02235 (QY867_02235) - 451070..451477 (+) 408 WP_004265086.1 Mini-ribonuclease 3 -
  QY867_RS02240 (QY867_02240) rlmB 451464..452351 (+) 888 WP_082267809.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QY867_RS02245 (QY867_02245) - 452355..452888 (+) 534 WP_337457408.1 NYN domain-containing protein -
  QY867_RS02250 (QY867_02250) sigH 452966..453526 (+) 561 WP_056947508.1 sigma-70 family RNA polymerase sigma factor Regulator
  QY867_RS02255 (QY867_02255) rpmG 453652..453801 (+) 150 WP_011375366.1 50S ribosomal protein L33 -
  QY867_RS02260 (QY867_02260) secE 453817..453990 (+) 174 WP_016265665.1 preprotein translocase subunit SecE -
  QY867_RS02265 (QY867_02265) nusG 454088..454636 (+) 549 WP_011375364.1 transcription termination/antitermination protein NusG -
  QY867_RS02270 (QY867_02270) - 455094..455957 (+) 864 WP_251944913.1 alpha/beta fold hydrolase -
  QY867_RS02275 (QY867_02275) rplK 456083..456508 (+) 426 WP_004270859.1 50S ribosomal protein L11 -
  QY867_RS02280 (QY867_02280) rplA 456607..457296 (+) 690 WP_004270847.1 50S ribosomal protein L1 -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 22089.28 Da        Isoelectric Point: 7.4752

>NTDB_id=854055 QY867_RS02250 WP_056947508.1 452966..453526(+) (sigH) [Latilactobacillus sakei strain A1291]
MEQTKRDKMLIAAVAQNDSQALDVLFKAYLPMVYHTVAPYYIRLFDEDDWLQEARIVCYETCQCYDCQKGKSFGSFYKLR
FKNHILNLLRRELAQKRRGDRQAVLIAERPEHDAISEDTMTYYQSQFELRCYLETLSPFELVSFRVLTGQLSIDEACCQL
DCTIDQLKRGQSRCQTKLKRYYQENR

Nucleotide


Download         Length: 561 bp        

>NTDB_id=854055 QY867_RS02250 WP_056947508.1 452966..453526(+) (sigH) [Latilactobacillus sakei strain A1291]
ATGGAACAAACAAAGCGTGACAAAATGCTGATTGCAGCAGTGGCTCAGAATGATTCACAAGCACTAGATGTATTATTCAA
GGCGTATTTGCCGATGGTGTATCACACCGTGGCGCCATATTATATCCGGTTATTCGATGAAGACGATTGGTTACAAGAAG
CCCGGATTGTTTGTTACGAAACTTGCCAGTGTTACGATTGTCAAAAAGGCAAAAGTTTTGGGAGTTTCTATAAATTACGG
TTTAAAAACCACATTTTAAATTTACTACGACGAGAACTCGCACAAAAACGGCGAGGTGATCGTCAGGCAGTATTGATTGC
GGAGCGACCGGAACACGACGCGATTTCAGAAGATACGATGACTTACTATCAATCGCAGTTTGAATTGCGATGTTATCTTG
AAACGCTGTCGCCTTTTGAATTAGTGTCGTTTCGGGTGCTGACCGGGCAGCTTTCAATTGATGAAGCTTGTTGCCAACTC
GATTGTACGATTGATCAGTTGAAACGGGGCCAATCAAGGTGTCAGACTAAGTTAAAACGGTATTATCAAGAGAATCGTTA
A

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(25-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

96.774

100

0.968