Detailed information NTG0085404

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: BVAD3_RS01940
• Genome accession: NZ_AP024501
• Coordinates: 390114..391262 (+)
• Length: 382 a.a.
• NCBI ID: WP_014304340.1
• Uniprot ID: I2C1C2
• Organism: Bacillus velezensis strain AD-3
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 385114..396262

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BVAD3_RS01920 (BVAD3_03430)	-	385514..386197 (-)	684	WP_022552585.1	ABC transporter ATP-binding protein	-
BVAD3_RS01925 (BVAD3_03440)	-	386212..387645 (-)	1434	WP_095273130.1	ABC transporter permease	-
BVAD3_RS01930 (BVAD3_03450)	-	387858..388541 (+)	684	WP_022552587.1	response regulator transcription factor	-
BVAD3_RS01935 (BVAD3_03460)	-	388528..389955 (+)	1428	WP_089072406.1	HAMP domain-containing sensor histidine kinase	-
BVAD3_RS01940 (BVAD3_03470)	rapC	390114..391262 (+)	1149	WP_014304340.1	Rap family tetratricopeptide repeat protein	Regulator
BVAD3_RS01945	phrC	391246..391365 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
BVAD3_RS01950	-	391515..391610 (-)	96	WP_021495118.1	YjcZ family sporulation protein	-
BVAD3_RS01955 (BVAD3_03480)	-	391705..393069 (-)	1365	WP_045508518.1	aspartate kinase	-
BVAD3_RS01960 (BVAD3_03490)	ceuB	393483..394436 (+)	954	WP_014416904.1	ABC transporter permease	Machinery gene
BVAD3_RS01965 (BVAD3_03500)	-	394426..395373 (+)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
BVAD3_RS01970 (BVAD3_03510)	-	395367..396125 (+)	759	WP_012116804.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45494.75 Da
• Isoelectric Point: 4.9939

>NTDB_id=85404 BVAD3_RS01940 WP_014304340.1 390114..391262(+) (rapC) [Bacillus velezensis strain AD-3]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=85404 BVAD3_RS01940 WP_014304340.1 390114..391262(+) (rapC) [Bacillus velezensis strain AD-3]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAAGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTATGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAAGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (223-294)

3D structure

• AlphaFold DB: I2C1C2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568