Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   QYM01_RS09930 Genome accession   NZ_CP129527
Coordinates   2082229..2083002 (+) Length   257 a.a.
NCBI ID   WP_111690534.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain BJ-1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2077229..2088002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM01_RS09920 (QYM01_09920) rlmH 2080197..2080676 (-) 480 WP_206158850.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  QYM01_RS09925 (QYM01_09925) htrA 2080886..2082109 (+) 1224 WP_301899792.1 trypsin-like peptidase domain-containing protein Regulator
  QYM01_RS09930 (QYM01_09930) spo0J 2082229..2083002 (+) 774 WP_111690534.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29162.83 Da        Isoelectric Point: 9.7975

>NTDB_id=854024 QYM01_RS09930 WP_111690534.1 2082229..2083002(+) (spo0J) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
MTEILMHIPIEDIVANPYQPRLQFNQKELEELAHSIQANGLIQPIIVRKSDVFGYELVAGERRFKAAKLAGLQKIPAIVK
EMSTLESMQQAIVENLQRSNLNAIEEAKAYQLLIDKNKMTHEDIATYMGKSRPYISNTIRLLQLPDVIRQAIEDGTISAG
HARALLSLSTPKEQELYFHNILDQGLSVRQIEQLVKTKHPPKKRNKHKTIFVKSLEKELSKSLGLPVALSLQKNDSGQLQ
LSFSNQEELNRIINKLL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=854024 QYM01_RS09930 WP_111690534.1 2082229..2083002(+) (spo0J) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
ATGACAGAAATCCTAATGCACATTCCTATCGAGGATATTGTGGCAAATCCTTATCAACCACGTCTTCAATTTAATCAAAA
AGAGCTTGAGGAGCTGGCACATTCCATTCAGGCTAATGGTTTGATTCAACCAATCATTGTCAGAAAATCTGATGTATTTG
GCTATGAATTGGTCGCTGGAGAACGACGCTTTAAAGCAGCCAAGCTGGCAGGACTTCAAAAGATCCCAGCAATTGTTAAG
GAAATGTCTACTCTTGAGAGCATGCAGCAGGCCATCGTAGAAAACCTACAGCGCTCAAATTTAAATGCTATTGAAGAGGC
TAAGGCCTATCAATTACTCATTGATAAAAATAAGATGACCCATGAGGACATCGCGACATACATGGGAAAATCACGCCCTT
ATATCAGCAACACCATCAGACTGCTGCAACTACCAGACGTTATTAGACAAGCGATTGAGGACGGTACCATTAGCGCCGGC
CATGCAAGAGCTTTATTATCCTTGTCAACACCAAAAGAGCAGGAGCTTTATTTTCACAACATTCTGGATCAAGGCTTAAG
CGTTAGGCAAATCGAACAGCTGGTAAAGACTAAGCATCCCCCAAAAAAAAGAAACAAACATAAAACCATTTTTGTGAAGT
CTTTAGAAAAAGAGCTCTCAAAATCATTAGGATTACCTGTGGCATTGTCTCTCCAAAAAAATGACAGTGGGCAGCTGCAA
CTGTCATTTTCAAACCAAGAAGAATTGAACAGAATTATCAACAAGTTGCTTTAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(148-196)

ParB/Sulfiredoxin domain (ParB_N)

(7-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

61.719

99.611

0.615