Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   QYM01_RS07805 Genome accession   NZ_CP129527
Coordinates   1643242..1644564 (-) Length   440 a.a.
NCBI ID   WP_301899526.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain BJ-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1638242..1649564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM01_RS07795 (QYM01_07795) raiA 1641978..1642526 (-) 549 WP_012679953.1 ribosome-associated translation inhibitor RaiA -
  QYM01_RS07800 (QYM01_07800) - 1642602..1643228 (-) 627 WP_301899525.1 ComF family protein -
  QYM01_RS07805 (QYM01_07805) comFA/cflA 1643242..1644564 (-) 1323 WP_301899526.1 DEAD/DEAH box helicase Machinery gene
  QYM01_RS07810 (QYM01_07810) - 1644620..1645261 (+) 642 WP_111678373.1 YigZ family protein -
  QYM01_RS07815 (QYM01_07815) cysK 1645382..1646308 (+) 927 WP_301899528.1 cysteine synthase A -
  QYM01_RS07820 (QYM01_07820) - 1646709..1647071 (-) 363 WP_231145331.1 S1 RNA-binding domain-containing protein -
  QYM01_RS07825 (QYM01_07825) - 1647071..1648471 (-) 1401 WP_301899530.1 Cof-type HAD-IIB family hydrolase -
  QYM01_RS07830 (QYM01_07830) - 1648504..1649145 (-) 642 WP_021321066.1 response regulator -

Sequence

Protein


Download         Length: 440 a.a.        Molecular weight: 49875.95 Da        Isoelectric Point: 9.5418

>NTDB_id=854006 QYM01_RS07805 WP_301899526.1 1643242..1644564(-) (comFA/cflA) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
MENIENYYGRLLPEGQCPKAVSVWACSLQSMIAKKGTLYCQRCSSLIEKAHQLPSGAYYCRACLVFGRNQSDRPLLYFPP
APFPKGHYLRWQGQLTTYQGAVSHQLTNHVKLKQDTLVHAVTGAGKTEMMYEAIAAVVDKGGWVCIASPRVDVCIELEKR
LSRDFSCQVCLMHAESEAYHRSPIIIATTHQLMTFYHAFDLLIIDEVDAFPFVNNRQLNHAAHQAAKADAVTVYLTATST
RDLERKVKQKELVKLTLARRFHGKPLVVPKYQRLFSLLEAINRGKLPRRFITLVKKQRATGYPLLIFFPLIELAEQCCQL
LQKYFPKETIAHASSQSSNRMAIIEQFRQGQITILISTTILERGVTFPTVDVFVLLANHRLYTSSSLIQISGRVGRSLER
PEGQVLFFHDGISQAMLKAVREIKDMNQKGYQNELSTLPQ

Nucleotide


Download         Length: 1323 bp        

>NTDB_id=854006 QYM01_RS07805 WP_301899526.1 1643242..1644564(-) (comFA/cflA) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
ATGGAGAATATCGAAAATTACTATGGACGTCTTTTACCCGAAGGGCAATGCCCAAAGGCTGTTTCTGTCTGGGCTTGTAG
CTTACAAAGCATGATCGCTAAAAAAGGAACATTATACTGCCAACGCTGTAGCAGTTTAATTGAGAAAGCTCATCAGCTAC
CTAGCGGTGCTTACTATTGTAGAGCCTGTCTCGTTTTTGGTCGAAACCAATCTGATCGCCCCTTGCTCTATTTTCCACCG
GCTCCTTTTCCAAAGGGACATTATCTGAGGTGGCAAGGACAGCTCACAACATATCAAGGAGCTGTCTCTCATCAGCTTAC
TAACCATGTTAAGCTCAAGCAAGACACACTGGTTCATGCAGTTACTGGCGCTGGTAAAACAGAGATGATGTATGAAGCCA
TTGCAGCAGTTGTTGATAAGGGTGGCTGGGTCTGCATTGCTAGTCCACGAGTTGATGTCTGCATAGAGCTTGAAAAACGA
CTATCGCGGGACTTTTCCTGTCAAGTCTGTCTTATGCATGCTGAGTCAGAGGCTTATCATAGAAGTCCCATAATCATTGC
CACAACACATCAATTGATGACCTTTTATCATGCTTTTGATCTGCTTATTATTGACGAAGTAGATGCCTTTCCCTTTGTCA
ACAATCGTCAATTAAACCATGCTGCTCATCAGGCTGCAAAAGCAGATGCAGTGACAGTATACCTAACAGCAACCTCTACA
AGAGACTTAGAGCGCAAGGTCAAGCAAAAAGAGCTTGTCAAATTGACATTAGCAAGAAGATTTCATGGCAAGCCCTTAGT
TGTCCCAAAGTATCAAAGATTATTCTCCCTTTTAGAGGCTATCAATCGCGGGAAATTGCCTAGAAGGTTCATCACCCTAG
TCAAAAAACAAAGGGCAACTGGCTATCCCCTCTTAATCTTTTTCCCCCTTATTGAGCTAGCTGAGCAATGCTGTCAGCTG
CTGCAAAAGTATTTTCCTAAGGAAACTATTGCCCATGCTTCCAGTCAGTCATCAAATCGAATGGCTATCATTGAGCAATT
CAGACAAGGACAAATCACTATACTTATATCAACAACCATTTTGGAAAGAGGTGTGACCTTTCCGACCGTAGATGTCTTTG
TCTTGTTAGCCAATCATCGCCTTTACACAAGCAGCAGTCTTATTCAGATTTCAGGTCGCGTTGGGCGCTCCTTGGAAAGG
CCTGAAGGACAGGTGCTATTTTTTCATGATGGTATTAGCCAGGCTATGCTCAAGGCAGTGCGGGAGATAAAGGATATGAA
TCAAAAAGGGTATCAAAATGAACTGTCTACTCTGCCACAATAA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(112-244)

Helicase conserved C-terminal domain (Helicase_C)

(288-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae R6

52.471

96.591

0.507
  comFA/cflA Streptococcus pneumoniae Rx1

52.471

96.591

0.507
  comFA/cflA Streptococcus pneumoniae D39

52.471

96.591

0.507
  comFA/cflA Streptococcus pneumoniae TIGR4

52.471

96.591

0.507
  comFA/cflA Streptococcus mitis SK321

52.471

96.591

0.507
  comFA/cflA Streptococcus mitis NCTC 12261

52.235

96.591

0.505
  comFA Lactococcus lactis subsp. cremoris KW2

47.704

89.091

0.425