Detailed information NTG0853976

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: QYM01_RS01555
• Genome accession: NZ_CP129527
• Coordinates: 297967..298902 (+)
• Length: 311 a.a.
• NCBI ID: WP_164335393.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain BJ-1
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 292967..303902

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYM01_RS01535 (QYM01_01535)	-	293126..294784 (+)	1659	WP_206158965.1	peptide ABC transporter substrate-binding protein	-
QYM01_RS01540 (QYM01_01540)	-	294953..295867 (+)	915	WP_115250569.1	ABC transporter permease	-
QYM01_RS01545 (QYM01_01545)	-	295877..296908 (+)	1032	WP_012678545.1	ABC transporter permease	-
QYM01_RS01550 (QYM01_01550)	oppD	296921..297967 (+)	1047	WP_012678544.1	ABC transporter ATP-binding protein	Regulator
QYM01_RS01555 (QYM01_01555)	amiF	297967..298902 (+)	936	WP_164335393.1	ATP-binding cassette domain-containing protein	Regulator
QYM01_RS01560 (QYM01_01560)	rnjA	299552..301234 (-)	1683	WP_012514941.1	ribonuclease J1	-
QYM01_RS01565 (QYM01_01565)	-	301236..301466 (-)	231	WP_014622279.1	DNA-dependent RNA polymerase subunit epsilon	-
QYM01_RS01570 (QYM01_01570)	tsaB	301751..302449 (+)	699	WP_206158966.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
QYM01_RS01575 (QYM01_01575)	rimI	302452..302877 (+)	426	WP_115250574.1	ribosomal protein S18-alanine N-acetyltransferase	-
QYM01_RS01580 (QYM01_01580)	tsaD	302867..303883 (+)	1017	WP_115250575.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35041.14 Da
• Isoelectric Point: 8.3839

>NTDB_id=853976 QYM01_RS01555 WP_164335393.1 297967..298902(+) (amiF) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
MTEARKKLIEVKNVSLTFNKGKKNEVKAIDRLSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISDGEIIFNGENVSQL
KGKKLHSFRKHAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREARVQELLKLVGLNQDHLTRYPHEFSGGQRQ
RIGIARALAVKPTFIIADEPISALDVSIQAQVVSLMQQLQKKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDE
VYNHPIHPYTKSLISAIPEPDPEKERRRIAEVYDPSQELDGQERQMHEITPGHFVLATQAEADQYRAERGL

Nucleotide

• Length: 936 bp

>NTDB_id=853976 QYM01_RS01555 WP_164335393.1 297967..298902(+) (amiF) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
ATGACAGAAGCTCGTAAAAAATTAATCGAAGTAAAGAATGTTTCCTTAACCTTTAACAAGGGGAAGAAAAACGAGGTTAA
GGCTATTGATCGCCTTAGCTTTGACATTTATGAAGGGGAAGTATTTGGCCTTGTTGGGGAATCAGGCTCAGGCAAGACAA
CAGTTGGTCGAGCTATTTTGAAATTGTATGATATTAGTGATGGCGAGATTATCTTTAATGGAGAAAACGTCTCCCAATTA
AAGGGGAAAAAGCTGCATAGCTTTCGTAAGCATGCGCAAATGATCTTCCAAGATCCTCAGGCTAGTCTGAACGGTCGCAT
GAAAATCAGAGACATTGTTGCAGAGGGCTTAGACATTCATGGCTTGACAGCCTCAAAGGCAGAGCGTGAGGCAAGAGTCC
AAGAGCTGTTAAAGCTTGTTGGGCTTAATCAGGATCATTTGACGCGGTACCCACATGAATTTTCTGGTGGCCAACGCCAG
CGGATTGGCATTGCGCGTGCCCTGGCTGTGAAGCCGACCTTTATTATCGCAGATGAGCCGATTTCAGCGCTTGATGTGTC
GATTCAAGCACAGGTAGTGAGTCTCATGCAGCAATTGCAAAAGAAGCGCGGCTTGACCTATCTCTTTATCGCACACGATT
TGTCTATGGTCAAATACATTTCAGACCGTATTGGTGTGATGCATTGGGGCAAAATGCTTGAGATTGGAACATCTGATGAG
GTTTACAATCACCCGATTCACCCTTATACGAAAAGCTTGATCTCGGCCATTCCTGAGCCGGATCCTGAAAAGGAGCGTAG
GCGCATTGCAGAGGTTTATGATCCTAGTCAAGAGCTAGATGGCCAAGAGCGGCAAATGCATGAAATCACTCCTGGGCATT
TTGTCTTAGCGACGCAGGCCGAAGCCGATCAGTACCGAGCAGAGCGTGGCCTCTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-269)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	53.922	98.392	0.531
amiF	Streptococcus thermophilus LMG 18311	53.595	98.392	0.527
amiF	Streptococcus salivarius strain HSISS4	53.268	98.392	0.524