Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QYM01_RS01250 Genome accession   NZ_CP129527
Coordinates   237348..238709 (+) Length   453 a.a.
NCBI ID   WP_115250536.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain BJ-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 232348..243709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM01_RS01235 (QYM01_01235) - 233922..235718 (+) 1797 WP_301899954.1 ABC transporter ATP-binding protein -
  QYM01_RS01240 (QYM01_01240) - 235870..236637 (+) 768 WP_301899956.1 epoxyqueuosine reductase QueH -
  QYM01_RS01245 (QYM01_01245) - 236836..237282 (+) 447 WP_037580461.1 dUTP diphosphatase -
  QYM01_RS01250 (QYM01_01250) radA 237348..238709 (+) 1362 WP_115250536.1 DNA repair protein RadA Machinery gene
  QYM01_RS01255 (QYM01_01255) - 238870..239148 (-) 279 WP_041790617.1 hypothetical protein -
  QYM01_RS01260 (QYM01_01260) - 239534..240040 (+) 507 WP_012678595.1 carbonic anhydrase -
  QYM01_RS01265 (QYM01_01265) - 240168..240881 (+) 714 WP_012514886.1 TIGR00266 family protein -
  QYM01_RS01270 (QYM01_01270) gltX 241487..242932 (+) 1446 WP_301899959.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49286.70 Da        Isoelectric Point: 7.0273

>NTDB_id=853974 QYM01_RS01250 WP_115250536.1 237348..238709(+) (radA) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
MAKKKARFICGECGYQSPKYLGRCPNCSAWSSFVEEAEVKDVKNARISLTGEKSKPIKLKHVNGVRYQRIQTEMNEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKMRSDRLGQTDNDFYLYAETNMQAIRAEIE
AIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTAELLQLAKSNHIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFDMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQALVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGDIR
RVTRIEQRINEAAKLGFTKLYAPKSSLQGIDLPKGIEVVGVTTVGEVLKAVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=853974 QYM01_RS01250 WP_115250536.1 237348..238709(+) (radA) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
ATAGCTAAGAAAAAGGCAAGGTTTATCTGTGGGGAATGTGGCTATCAGTCACCCAAATATCTGGGGCGTTGCCCTAATTG
CTCTGCCTGGTCTTCTTTTGTAGAGGAGGCTGAGGTCAAGGATGTCAAAAATGCCCGTATTAGCCTGACTGGAGAAAAAA
GTAAGCCCATCAAGCTAAAGCATGTCAATGGCGTTCGCTACCAGCGTATCCAGACTGAGATGAATGAGTTCAATCGTGTG
CTGGGCGGAGGTGTTGTGCCGGGGAGCTTGGTGTTGATTGGTGGTGATCCTGGTATTGGTAAGTCAACATTGCTTTTGCA
GGTATCTATCCAGCTTGCAGATAAGGGAACTGTTTTATATGTCTCTGGAGAGGAATCGGCAGAGCAGATCAAGATGCGCA
GTGACCGCTTGGGACAGACCGACAATGACTTTTACCTCTATGCAGAGACCAATATGCAGGCTATTCGAGCAGAGATTGAA
GCCATTCAGCCGGACTTTTTGATTATTGACTCCATTCAGACCATTATGAGTCCTGATATTTCTGGTGTTCAAGGCTCGGT
TAGTCAGGTGAGAGAGGTCACTGCCGAGCTGCTCCAGCTAGCTAAGTCTAATCATATTGCAACCTTTATTGTAGGACATG
TCACCAAGGAGGGCACCCTAGCAGGGCCTCGTATGCTGGAGCATATGGTTGATACGGTCCTTTATTTTGAGGGCGAGAGG
CATCATACCTTTCGTATCTTGCGAGCGGTTAAAAATCGTTTTGGCTCAACCAATGAGATTGGTATTTTTGACATGCAATC
AGGTGGGCTAGTGGAGGTTCTCAATCCCAGTCAGGTGTTCTTAGAGGAACGATTAGATGGGGCAACAGGCTCTGCTGTGG
TTGTTACCATGGAGGGGAGCAGACCGATTTTGGCAGAGGTGCAGGCCTTAGTCACACCTACTGTTTTTGGTAATGCTAGA
CGAACGACGACTGGGTTGGACTTTAATCGCGTCAGTCTGATTATGGCTGTTTTGGAAAAGCGCTGCGGGCTTTTATTACA
AAATCAAGATGCCTACCTCAAATCAGCAGGCGGTGTTAAGCTAGATGAGCCTGCTATTGACTTGGCAGTTGCTGTGGCGA
TTGCCTCTAGTTACAAGGAAAAACCGACCAACCCTCAGGAGGCCTTTTTGGGAGAGATTGGCTTGACTGGTGATATTCGG
CGTGTGACCCGTATTGAGCAGCGGATCAATGAAGCTGCTAAGCTTGGTTTTACCAAGCTTTACGCGCCTAAAAGCTCATT
GCAGGGGATTGATCTGCCAAAGGGGATTGAGGTTGTTGGTGTGACGACAGTAGGAGAGGTTTTAAAGGCAGTCTTTGCTT
AG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(60-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

84.547

100

0.845
  radA Streptococcus pneumoniae D39

84.547

100

0.845
  radA Streptococcus pneumoniae R6

84.547

100

0.845
  radA Streptococcus pneumoniae TIGR4

84.547

100

0.845
  radA Streptococcus mitis NCTC 12261

84.106

100

0.841
  radA Streptococcus mitis SK321

84.106

100

0.841
  radA Bacillus subtilis subsp. subtilis str. 168

61.369

100

0.614