Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   V6U69_RS06345 Genome accession   NZ_CP145867
Coordinates   1410403..1411059 (+) Length   218 a.a.
NCBI ID   WP_037600455.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS10     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1405403..1416059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U69_RS06315 (V6U69_06310) - 1405692..1405961 (-) 270 WP_002890660.1 DUF3165 family protein -
  V6U69_RS06320 (V6U69_06315) typA 1405981..1407831 (-) 1851 WP_002884130.1 translational GTPase TypA -
  V6U69_RS06325 (V6U69_06320) - 1407972..1408940 (-) 969 WP_037600464.1 ROK family glucokinase -
  V6U69_RS06330 (V6U69_06325) - 1408915..1409139 (-) 225 WP_037600461.1 YqgQ family protein -
  V6U69_RS06335 (V6U69_06330) - 1409247..1409684 (-) 438 WP_002884117.1 Fur family transcriptional regulator -
  V6U69_RS06340 (V6U69_06335) - 1409772..1410293 (-) 522 WP_037600458.1 Dps family protein -
  V6U69_RS06345 (V6U69_06340) cclA/cilC 1410403..1411059 (+) 657 WP_037600455.1 prepilin peptidase Machinery gene
  V6U69_RS06350 (V6U69_06345) - 1411089..1412480 (-) 1392 WP_084639284.1 serine hydrolase -
  V6U69_RS06355 (V6U69_06350) sodA 1412579..1413184 (-) 606 WP_037600453.1 superoxide dismutase SodA -
  V6U69_RS06360 (V6U69_06355) holA 1413280..1414314 (-) 1035 WP_037600450.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25145.32 Da        Isoelectric Point: 7.9718

>NTDB_id=853973 V6U69_RS06345 WP_037600455.1 1410403..1411059(+) (cclA/cilC) [Streptococcus salivarius strain KSS10]
MLSIIYFFLGASLGSFIGLVCDRFPENSIIFPSSHCSHCKHQLRFSEMIPILSQLFLRSRCRSCQSPIPFRYLFMEIFCG
VICLLYFYDFLSLEVTYFLYFSLCLSIFDLKQKSYPLLIWIVGTVPLLFMGNYYLTFAIGILLAFLSFIKHLNIGEGDFL
YLASASLIFPFSKILLTIELACLLGLAYFLIRRNLKECIAFVPFLFLGIVLLTFYSIV

Nucleotide


Download         Length: 657 bp        

>NTDB_id=853973 V6U69_RS06345 WP_037600455.1 1410403..1411059(+) (cclA/cilC) [Streptococcus salivarius strain KSS10]
ATGTTAAGCATTATTTATTTTTTTCTAGGAGCCTCTTTAGGCTCATTTATCGGACTAGTTTGTGATCGTTTTCCTGAGAA
CTCGATTATTTTTCCTAGTAGTCACTGTAGCCATTGCAAGCATCAGTTGCGTTTTTCCGAGATGATTCCTATCCTCTCAC
AACTTTTCTTAAGATCTCGATGTCGTTCATGTCAGTCTCCTATCCCTTTTCGTTACCTCTTTATGGAAATATTTTGTGGG
GTAATATGTCTTCTATATTTCTATGACTTTTTAAGTCTTGAAGTAACCTACTTTCTTTACTTCAGCCTTTGTTTATCTAT
TTTTGATTTGAAACAGAAATCCTATCCACTTCTGATTTGGATAGTTGGAACAGTCCCACTCCTATTCATGGGCAACTATT
ACCTCACATTTGCCATAGGGATACTCCTCGCTTTCCTTTCTTTTATAAAACATCTAAACATTGGGGAAGGTGATTTTCTC
TACTTAGCAAGTGCCTCACTTATTTTCCCATTTTCAAAAATACTTCTAACTATCGAGCTTGCGTGCCTATTAGGGCTAGC
GTACTTCCTTATACGAAGAAATCTTAAGGAATGTATCGCATTTGTCCCATTTCTTTTTCTAGGGATTGTACTTCTTACCT
TTTATTCAATTGTATAG

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

39.72

98.165

0.39
  cclA/cilC Streptococcus pneumoniae TIGR4

39.252

98.165

0.385
  cclA/cilC Streptococcus mitis NCTC 12261

38.785

98.165

0.381
  cclA/cilC Streptococcus pneumoniae Rx1

38.318

98.165

0.376
  cclA/cilC Streptococcus pneumoniae D39

38.318

98.165

0.376
  cclA/cilC Streptococcus pneumoniae R6

38.318

98.165

0.376