Detailed information NTG0853973

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: QYM01_RS00835
• Genome accession: NZ_CP129527
• Coordinates: 144694..147135 (+)
• Length: 813 a.a.
• NCBI ID: WP_301899877.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain BJ-1
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 139694..152135

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QYM01_RS00805 (QYM01_00805)	rpsB	139883..140653 (-)	771	WP_012677249.1	30S ribosomal protein S2	-
QYM01_RS00810 (QYM01_00810)	ahpF	141113..142645 (-)	1533	WP_206158907.1	alkyl hydroperoxide reductase subunit F	-
QYM01_RS00815 (QYM01_00815)	ahpC	142666..143226 (-)	561	WP_012514798.1	alkyl hydroperoxide reductase subunit C	-
QYM01_RS00825 (QYM01_00825)	-	143858..144061 (+)	204	WP_012514799.1	cold-shock protein	-
QYM01_RS00830 (QYM01_00830)	-	144233..144694 (+)	462	WP_012514800.1	CtsR family transcriptional regulator	-
QYM01_RS00835 (QYM01_00835)	clpC	144694..147135 (+)	2442	WP_301899877.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
QYM01_RS00840 (QYM01_00840)	-	147483..147587 (-)	105	WP_037580603.1	putative holin-like toxin	-
QYM01_RS00845 (QYM01_00845)	-	147908..148339 (+)	432	WP_301899878.1	hypothetical protein	-
QYM01_RS00850 (QYM01_00850)	-	148341..149630 (+)	1290	WP_301899879.1	hypothetical protein	-
QYM01_RS00855 (QYM01_00855)	-	149612..150004 (+)	393	WP_043052649.1	hypothetical protein	-
QYM01_RS00860 (QYM01_00860)	-	149985..150275 (+)	291	WP_037580586.1	hypothetical protein	-
QYM01_RS00865 (QYM01_00865)	groES	150574..150861 (+)	288	WP_012514806.1	co-chaperone GroES	-

Sequence

Protein

• Length: 813 a.a.
• Molecular weight: 90425.27 Da
• Isoelectric Point: 6.4365

>NTDB_id=853973 QYM01_RS00835 WP_301899877.1 144694..147135(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
MMTYSLKMQDIFNQAQFQAERFDSPYLETWHILLAMVAVDHSLAAMVLSEFERKIRAEEYEAAAILAMGKSPKEVTSVQF
KPQSKALSEILAFAHAICQVTNEHEVGSEHVLFAILLNPDIMASRLLELAGYRLKDSGKGEPRFADLRKAIELNAGYSKE
TIKAIHELRKPKKTKSVGTFSEMMKPQSTAGELSDFTRDLTEMARQGLLEPVIGREKEVSRMVQVLCRKTKNNPVLVGDA
GVGKTALAYGLAQRIANGVIPYELQDMRVLELDMMSVVAGTRFRGDFEERMNQLIDDIEADGKIILFVDELHTIMGSGSG
IDSTLDAANILKPALSRGTLHMVGATTQEEYQKHIEKDAALSRRFAKILIEEPSVDDAYQILLGLRASYEQYHNVTISDK
AVHTAVKLAQRYLTSKQLPDSAIDLLDEASAMVQSMVKKTQPDFITPLDQALLDGDMVKVSAILAKEDKQPKLKPTAVTE
DDMLHTLSKLSGIPLEKLTQADSKKYLNLEKELHKRVVGQEMAVSAIARAIRRNQSGIRTGRRPIGSFMFLGPTGVGKTE
LAKALAELLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTEKVRNKPYAVLLFDEVEKAHPDIFNILLQV
LDDGMLTDSRGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKAIGHDHQAMEKRILEELKKAYRPEFINRIDEKVVFHS
LTQENMRDVVKIMVKPLIAALAEKHISLKFQPSALKYLSESGYDVEMGARPLRRTLQTEVEDRLAELMLSGELSSGQSLK
IGVSRGKLAFDIA

Nucleotide

• Length: 2442 bp

>NTDB_id=853973 QYM01_RS00835 WP_301899877.1 144694..147135(+) (clpC) [Streptococcus equi subsp. zooepidemicus strain BJ-1]
GTGATGACTTATTCATTAAAGATGCAAGACATTTTTAATCAGGCTCAATTTCAGGCAGAGCGCTTTGATAGTCCCTACCT
TGAGACCTGGCACATTTTATTAGCTATGGTAGCTGTTGATCATTCTTTAGCAGCCATGGTTTTAAGTGAATTTGAACGAA
AGATCAGAGCTGAAGAGTATGAGGCAGCTGCCATTTTAGCTATGGGAAAAAGTCCCAAGGAGGTGACTTCTGTCCAATTC
AAGCCGCAATCCAAGGCCTTATCAGAAATACTAGCATTTGCTCATGCTATCTGTCAGGTCACCAATGAGCATGAGGTTGG
CTCAGAGCATGTGCTTTTTGCTATTTTGCTCAATCCGGACATTATGGCTAGTCGTCTATTAGAATTGGCAGGCTACAGGC
TTAAGGATTCTGGCAAGGGAGAGCCTAGGTTTGCGGATTTACGTAAGGCTATTGAGCTAAATGCCGGCTATAGTAAGGAA
ACCATTAAGGCGATTCATGAGTTGCGTAAGCCTAAAAAGACGAAATCAGTAGGCACCTTTTCTGAAATGATGAAGCCACA
GAGTACAGCTGGTGAGCTATCAGACTTTACTAGAGACCTGACAGAGATGGCAAGACAGGGCTTGTTAGAGCCAGTTATCG
GACGAGAAAAAGAAGTGTCACGTATGGTTCAGGTGCTCTGTCGTAAGACTAAAAATAATCCTGTTCTTGTTGGTGATGCG
GGTGTTGGAAAAACTGCTCTAGCTTATGGCTTGGCACAGCGTATTGCAAACGGCGTGATTCCTTATGAATTACAGGACAT
GCGTGTCTTGGAGCTTGACATGATGAGTGTGGTTGCAGGTACCCGTTTTCGTGGGGATTTTGAAGAGCGCATGAATCAAC
TCATTGACGATATTGAAGCAGATGGCAAAATCATCTTGTTTGTCGATGAGCTACATACCATTATGGGATCAGGAAGTGGT
ATTGACAGCACTCTTGATGCAGCTAATATTCTAAAGCCAGCCCTTTCTCGCGGTACCCTGCATATGGTTGGTGCTACAAC
TCAAGAGGAATATCAAAAGCATATTGAAAAGGACGCAGCTCTTTCTCGTCGCTTTGCCAAGATATTGATTGAGGAGCCTA
GTGTCGATGATGCTTATCAGATTTTGCTTGGCTTGAGGGCCTCCTATGAACAGTACCATAATGTAACCATCTCTGATAAA
GCTGTTCATACTGCTGTGAAGCTGGCCCAGCGCTACCTGACGAGTAAGCAGCTTCCAGATTCAGCGATTGATCTGCTTGA
TGAAGCTAGTGCGATGGTACAAAGCATGGTTAAAAAGACGCAGCCTGACTTTATAACGCCGCTTGATCAAGCCCTACTTG
ATGGTGATATGGTCAAGGTATCCGCTATTTTAGCCAAAGAGGATAAGCAACCAAAGCTAAAACCAACAGCAGTTACTGAA
GATGATATGTTACACACCTTAAGCAAGCTATCAGGTATTCCCCTAGAAAAACTAACTCAGGCGGATAGTAAAAAATACCT
GAATCTGGAAAAGGAATTGCATAAGCGTGTTGTTGGTCAGGAAATGGCTGTTTCTGCTATTGCACGAGCCATTCGTCGTA
ACCAGTCAGGCATTCGCACAGGCAGGCGTCCGATTGGCTCCTTTATGTTTCTTGGTCCAACCGGTGTCGGAAAAACAGAG
CTAGCAAAGGCCTTGGCCGAATTACTCTTTGATGATGAGTCAGCCCTTATTCGTTTTGATATGTCTGAGTACATGGAAAA
ATTTGCAGCCTCCCGTCTTAATGGGGCTCCTCCTGGCTATGTTGGCTATGATGAGGGAGGAGAGCTAACCGAAAAGGTTA
GAAATAAGCCTTATGCCGTTCTTCTTTTTGATGAGGTTGAAAAGGCTCACCCAGACATCTTTAATATCCTGCTGCAGGTC
CTTGATGATGGTATGTTAACAGATAGTCGTGGACGTAAGGTTGATTTTTCAAACACGATTATTATCATGACGAGCAACCT
AGGAGCAACTGCTCTAAGAGATGATAAGACGGTTGGATTTGGCGCTAAAGCGATCGGTCATGACCATCAAGCAATGGAAA
AGCGTATTTTAGAAGAATTGAAAAAGGCTTATCGGCCTGAATTTATCAACAGAATTGATGAGAAGGTGGTCTTCCATAGC
CTAACACAGGAAAACATGCGTGATGTGGTGAAAATTATGGTTAAGCCGCTGATTGCAGCCTTGGCAGAAAAGCATATTAG
CCTTAAGTTCCAGCCATCAGCTCTCAAGTACTTGTCTGAATCTGGTTACGATGTTGAAATGGGCGCTCGCCCACTTCGTC
GCACCTTGCAAACAGAGGTTGAGGACAGGTTAGCAGAATTAATGCTGTCAGGAGAGTTATCAAGCGGTCAAAGCCTCAAG
ATTGGTGTATCACGTGGAAAACTAGCTTTTGATATCGCTTAA

Domains

Predicted by InterproScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (543-714)

• ATPase family associated with various cellular activities (AAA) (AAA) (235-367)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (721-800)

• AAA lid domain (AAA_lid_9) (374-453)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-131)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (15-51)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus mutans UA159	74.293	100	0.743
clpC	Streptococcus thermophilus LMD-9	72.181	100	0.724
clpC	Streptococcus thermophilus LMG 18311	71.936	100	0.722
clpC	Streptococcus pneumoniae Rx1	65.725	100	0.658
clpC	Streptococcus pneumoniae D39	65.725	100	0.658
clpC	Streptococcus pneumoniae TIGR4	65.602	100	0.657
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	48.865	100	0.503
clpC	Bacillus subtilis subsp. subtilis str. 168	43.952	100	0.451