Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   QYM42_RS11060 Genome accession   NZ_CP129526
Coordinates   2227667..2228605 (-) Length   312 a.a.
NCBI ID   WP_012898520.1    Uniprot ID   A0A2A9ILQ4
Organism   Lactococcus lactis strain ZZ-2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2222667..2233605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM42_RS11035 (QYM42_11035) frr 2222785..2223342 (-) 558 WP_004254618.1 ribosome recycling factor -
  QYM42_RS11040 (QYM42_11040) pyrH 2223554..2224270 (-) 717 WP_021464089.1 UMP kinase -
  QYM42_RS11045 (QYM42_11045) - 2224355..2224807 (-) 453 WP_251899905.1 hypothetical protein -
  QYM42_RS11050 (QYM42_11050) - 2224941..2226128 (-) 1188 WP_015427114.1 acetate kinase -
  QYM42_RS11055 (QYM42_11055) - 2226285..2227472 (-) 1188 WP_251899906.1 acetate kinase -
  QYM42_RS11060 (QYM42_11060) comYH 2227667..2228605 (-) 939 WP_012898520.1 class I SAM-dependent methyltransferase Machinery gene
  QYM42_RS11065 (QYM42_11065) - 2228693..2228944 (-) 252 WP_004254583.1 DUF3165 family protein -
  QYM42_RS11070 (QYM42_11070) typA 2229045..2230877 (-) 1833 WP_025016832.1 translational GTPase TypA -
  QYM42_RS12725 - 2231065..2231523 (-) 459 WP_058204391.1 hypothetical protein -
  QYM42_RS11080 (QYM42_11080) - 2231680..2232306 (-) 627 WP_251899907.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34798.94 Da        Isoelectric Point: 4.3717

>NTDB_id=853947 QYM42_RS11060 WP_012898520.1 2227667..2228605(-) (comYH) [Lactococcus lactis strain ZZ-2]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAAFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=853947 QYM42_RS11060 WP_012898520.1 2227667..2228605(-) (comYH) [Lactococcus lactis strain ZZ-2]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTACTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTTTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGCATGGGTAATCTTGCTGAAACGCTTTTGGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCAGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGAAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGGCCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A9ILQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487